Experiment: L-Serine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2614c and Rv2614A are separated by 108 nucleotides Rv2614A and Rv2615c overlap by 4 nucleotides Rv2615c and Rv2616 are separated by 344 nucleotides Rv2616 and Rv2617c are separated by 16 nucleotides
Rv2614c: Rv2614c - Probable threonyl-tRNA synthetase ThrS (threonine-tRNA synthetase)(ThrRS) (threonine-tRNA ligase), at 2,941,189 to 2,943,267
Rv2614c
Rv2614A: Rv2614A - Conserved hypothetical protein, at 2,943,376 to 2,943,603
Rv2614A
Rv2615c: Rv2615c - PE-PGRS family protein PE_PGRS45, at 2,943,600 to 2,944,985
Rv2615c
Rv2616: Rv2616 - Conserved protein, at 2,945,330 to 2,945,830
Rv2616
Rv2617c: Rv2617c - Probable transmembrane protein, at 2,945,847 to 2,946,287
Rv2617c
Position (kb)
2943
2944
2945 Strain fitness (log2 ratio)
-1
0
1 at 2943.340 kb on + strand at 2943.341 kb on - strand at 2943.923 kb on + strand, within Rv2615c at 2943.979 kb on + strand, within Rv2615c at 2943.980 kb on - strand, within Rv2615c at 2943.980 kb on - strand, within Rv2615c at 2943.980 kb on - strand, within Rv2615c at 2945.411 kb on + strand, within Rv2616 at 2945.603 kb on + strand, within Rv2616 at 2945.603 kb on + strand, within Rv2616 at 2945.603 kb on + strand, within Rv2616 at 2945.604 kb on - strand, within Rv2616 at 2945.604 kb on - strand, within Rv2616 at 2945.813 kb on + strand at 2945.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine 10 mM (N) remove 2,943,340 + +0.2 2,943,341 - +0.1 2,943,923 + Rv2615c 0.23 +0.2 2,943,979 + Rv2615c 0.27 +1.1 2,943,980 - Rv2615c 0.27 -0.2 2,943,980 - Rv2615c 0.27 +0.6 2,943,980 - Rv2615c 0.27 -0.4 2,945,411 + Rv2616 0.16 -0.2 2,945,603 + Rv2616 0.54 -0.2 2,945,603 + Rv2616 0.54 -1.1 2,945,603 + Rv2616 0.54 -0.6 2,945,604 - Rv2616 0.55 -1.2 2,945,604 - Rv2616 0.55 -1.1 2,945,813 + -0.3 2,945,814 - -0.0
Or see this region's nucleotide sequence