Experiment: L-Serine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0853c and Rv0854 are separated by 64 nucleotides Rv0854 and Rv0855 are separated by 5 nucleotides Rv0855 and Rv0856 are separated by 113 nucleotides Rv0856 and Rv0857 are separated by 27 nucleotides
Rv0853c: Rv0853c - Probable pyruvate or indole-3-pyruvate decarboxylase Pdc, at 949,436 to 951,118
Rv0853c
Rv0854: Rv0854 - Conserved protein, at 951,183 to 951,626
Rv0854
Rv0855: Rv0855 - Probable fatty-acid-CoA racemase Far, at 951,632 to 952,711
Rv0855
Rv0856: Rv0856 - Conserved hypothetical protein, at 952,825 to 953,229
Rv0856
Rv0857: Rv0857 - Conserved hypothetical protein, at 953,257 to 953,730
Rv0857
Position (kb) 951
952
953 Strain fitness (log2 ratio) -2
-1
0
1 at 951.003 kb on + strand at 951.060 kb on - strand at 951.060 kb on - strand at 951.078 kb on + strand at 951.078 kb on + strand at 951.130 kb on + strand at 951.131 kb on - strand at 951.146 kb on + strand at 951.171 kb on + strand at 951.208 kb on + strand at 951.208 kb on + strand at 951.208 kb on + strand at 951.209 kb on - strand at 951.213 kb on - strand at 951.388 kb on - strand, within Rv0854 at 951.388 kb on - strand, within Rv0854 at 951.388 kb on - strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.459 kb on + strand, within Rv0854 at 952.025 kb on + strand, within Rv0855 at 952.154 kb on + strand, within Rv0855 at 952.308 kb on - strand, within Rv0855 at 952.337 kb on + strand, within Rv0855 at 952.337 kb on + strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.451 kb on + strand, within Rv0855 at 952.451 kb on + strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.531 kb on + strand, within Rv0855 at 952.531 kb on + strand, within Rv0855 at 952.778 kb on - strand at 952.778 kb on - strand at 952.897 kb on + strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.975 kb on + strand, within Rv0856 at 952.975 kb on + strand, within Rv0856 at 952.976 kb on - strand, within Rv0856 at 952.976 kb on - strand, within Rv0856 at 953.047 kb on + strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.266 kb on - strand at 953.266 kb on - strand at 953.273 kb on + strand at 953.273 kb on + strand at 953.274 kb on - strand at 953.474 kb on + strand, within Rv0857 at 953.554 kb on + strand, within Rv0857
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine 10 mM (N) remove 951,003 + +0.0 951,060 - -1.2 951,060 - -0.7 951,078 + -0.4 951,078 + -0.4 951,130 + -0.1 951,131 - -0.2 951,146 + -0.3 951,171 + -0.6 951,208 + +0.3 951,208 + -0.0 951,208 + +0.8 951,209 - +0.8 951,213 - +0.4 951,388 - Rv0854 0.46 -0.4 951,388 - Rv0854 0.46 +0.4 951,388 - Rv0854 0.46 -0.7 951,389 + Rv0854 0.46 +0.8 951,389 + Rv0854 0.46 -0.1 951,389 + Rv0854 0.46 +0.2 951,459 + Rv0854 0.62 -0.4 952,025 + Rv0855 0.36 -0.3 952,154 + Rv0855 0.48 -0.2 952,308 - Rv0855 0.63 -2.1 952,337 + Rv0855 0.65 -0.1 952,337 + Rv0855 0.65 -1.1 952,338 - Rv0855 0.65 -1.2 952,338 - Rv0855 0.65 -0.2 952,338 - Rv0855 0.65 -0.3 952,451 + Rv0855 0.76 -0.1 952,451 + Rv0855 0.76 -0.4 952,452 - Rv0855 0.76 -0.1 952,452 - Rv0855 0.76 -0.5 952,452 - Rv0855 0.76 -1.5 952,531 + Rv0855 0.83 -1.6 952,531 + Rv0855 0.83 -0.3 952,778 - +0.6 952,778 - -0.0 952,897 + Rv0856 0.18 -0.6 952,898 - Rv0856 0.18 -0.3 952,898 - Rv0856 0.18 -0.4 952,898 - Rv0856 0.18 -0.6 952,975 + Rv0856 0.37 -0.2 952,975 + Rv0856 0.37 -0.1 952,976 - Rv0856 0.37 -0.4 952,976 - Rv0856 0.37 -0.2 953,047 + Rv0856 0.55 -0.2 953,048 - Rv0856 0.55 -0.2 953,048 - Rv0856 0.55 -0.2 953,048 - Rv0856 0.55 -1.0 953,048 - Rv0856 0.55 -0.3 953,266 - +0.6 953,266 - +0.3 953,273 + +0.0 953,273 + -0.0 953,274 - +0.0 953,474 + Rv0857 0.46 -1.5 953,554 + Rv0857 0.63 -0.5
Or see this region's nucleotide sequence