Experiment: Glycine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2612c and Rv2613c overlap by 4 nucleotides Rv2613c and Rv2614c overlap by 8 nucleotides Rv2614c and Rv2614A are separated by 108 nucleotides Rv2614A and Rv2615c overlap by 4 nucleotides
Rv2612c: Rv2612c - PI synthase PgsA1 (phosphatidylinositol synthase) (CDP-diacylglycerol--inositol-3-phosphatidyltransferase), at 2,939,959 to 2,940,612
Rv2612c
Rv2613c: Rv2613c - Conserved protein, at 2,940,609 to 2,941,196
Rv2613c
Rv2614c: Rv2614c - Probable threonyl-tRNA synthetase ThrS (threonine-tRNA synthetase)(ThrRS) (threonine-tRNA ligase), at 2,941,189 to 2,943,267
Rv2614c
Rv2614A: Rv2614A - Conserved hypothetical protein, at 2,943,376 to 2,943,603
Rv2614A
Rv2615c: Rv2615c - PE-PGRS family protein PE_PGRS45, at 2,943,600 to 2,944,985
Rv2615c
Position (kb)
2941
2942
2943
2944 Strain fitness (log2 ratio)
-1
0
1 at 2940.778 kb on - strand, within Rv2613c at 2940.778 kb on - strand, within Rv2613c at 2940.938 kb on - strand, within Rv2613c at 2941.085 kb on - strand, within Rv2613c at 2941.085 kb on - strand, within Rv2613c at 2941.225 kb on - strand at 2943.340 kb on + strand at 2943.341 kb on - strand at 2943.923 kb on + strand, within Rv2615c at 2943.979 kb on + strand, within Rv2615c at 2943.980 kb on - strand, within Rv2615c at 2943.980 kb on - strand, within Rv2615c at 2943.980 kb on - strand, within Rv2615c
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine 10 mM (N) remove 2,940,778 - Rv2613c 0.29 +0.8 2,940,778 - Rv2613c 0.29 -0.1 2,940,938 - Rv2613c 0.56 +0.3 2,941,085 - Rv2613c 0.81 -0.3 2,941,085 - Rv2613c 0.81 +0.1 2,941,225 - +1.3 2,943,340 + -0.2 2,943,341 - -0.4 2,943,923 + Rv2615c 0.23 +0.2 2,943,979 + Rv2615c 0.27 -0.3 2,943,980 - Rv2615c 0.27 +0.1 2,943,980 - Rv2615c 0.27 +0.7 2,943,980 - Rv2615c 0.27 -0.4
Or see this region's nucleotide sequence