Experiment: Glycine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0386 and Rv0387c are separated by 3 nucleotides Rv0387c and Rv0388c are separated by 52 nucleotides Rv0388c and Rv0389 are separated by 333 nucleotides
Rv0386: Rv0386 - Probable transcriptional regulatory protein (probably LuxR/UhpA-family), at 463,411 to 466,668
Rv0386
Rv0387c: Rv0387c - Conserved hypothetical protein, at 466,672 to 467,406
Rv0387c
Rv0388c: Rv0388c - PPE family protein PPE9, at 467,459 to 468,001
Rv0388c
Rv0389: Rv0389 - Probable phosphoribosylglycinamide formyltransferase 2 PurT (GART 2) (gar transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (formate-dependent gar transformylase), at 468,335 to 469,594
Rv0389
Position (kb) 466
467
468 Strain fitness (log2 ratio) -1
0
1
2 at 465.775 kb on + strand, within Rv0386 at 465.798 kb on + strand, within Rv0386 at 465.845 kb on - strand, within Rv0386 at 465.863 kb on - strand, within Rv0386 at 466.020 kb on + strand, within Rv0386 at 466.152 kb on + strand, within Rv0386 at 466.285 kb on - strand, within Rv0386 at 466.321 kb on + strand, within Rv0386 at 466.321 kb on + strand, within Rv0386 at 466.606 kb on + strand at 466.663 kb on - strand at 466.674 kb on - strand at 466.789 kb on + strand, within Rv0387c at 466.789 kb on + strand, within Rv0387c at 466.790 kb on - strand, within Rv0387c at 466.790 kb on - strand, within Rv0387c at 466.973 kb on + strand, within Rv0387c at 466.998 kb on + strand, within Rv0387c at 466.998 kb on + strand, within Rv0387c at 466.998 kb on + strand, within Rv0387c at 466.999 kb on - strand, within Rv0387c at 467.000 kb on + strand, within Rv0387c at 467.001 kb on - strand, within Rv0387c at 467.001 kb on - strand, within Rv0387c at 467.001 kb on - strand, within Rv0387c at 467.001 kb on - strand, within Rv0387c at 467.001 kb on - strand, within Rv0387c at 467.396 kb on - strand at 467.396 kb on - strand at 467.396 kb on - strand at 467.431 kb on + strand at 467.432 kb on - strand at 467.596 kb on + strand, within Rv0388c at 467.701 kb on - strand, within Rv0388c at 467.787 kb on + strand, within Rv0388c at 467.787 kb on + strand, within Rv0388c at 467.788 kb on - strand, within Rv0388c at 467.868 kb on + strand, within Rv0388c at 467.955 kb on + strand at 467.955 kb on + strand at 467.955 kb on + strand at 468.139 kb on + strand at 468.140 kb on - strand at 468.140 kb on - strand at 468.140 kb on - strand at 468.140 kb on - strand at 468.140 kb on - strand at 468.140 kb on - strand at 468.140 kb on - strand at 468.143 kb on + strand at 468.143 kb on + strand at 468.185 kb on - strand at 468.247 kb on + strand at 468.296 kb on + strand at 468.296 kb on + strand at 468.296 kb on + strand at 468.296 kb on + strand at 468.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine 10 mM (N) remove 465,775 + Rv0386 0.73 -0.1 465,798 + Rv0386 0.73 -0.4 465,845 - Rv0386 0.75 -0.1 465,863 - Rv0386 0.75 -0.4 466,020 + Rv0386 0.80 -0.9 466,152 + Rv0386 0.84 -0.2 466,285 - Rv0386 0.88 +0.3 466,321 + Rv0386 0.89 +0.1 466,321 + Rv0386 0.89 +0.0 466,606 + +0.2 466,663 - -1.7 466,674 - +0.3 466,789 + Rv0387c 0.16 -0.1 466,789 + Rv0387c 0.16 +0.2 466,790 - Rv0387c 0.16 +0.3 466,790 - Rv0387c 0.16 -0.2 466,973 + Rv0387c 0.41 -0.4 466,998 + Rv0387c 0.44 -0.2 466,998 + Rv0387c 0.44 -0.0 466,998 + Rv0387c 0.44 -0.0 466,999 - Rv0387c 0.44 +0.3 467,000 + Rv0387c 0.45 +0.3 467,001 - Rv0387c 0.45 -0.3 467,001 - Rv0387c 0.45 +1.6 467,001 - Rv0387c 0.45 -1.1 467,001 - Rv0387c 0.45 +0.3 467,001 - Rv0387c 0.45 -0.5 467,396 - -0.3 467,396 - -0.4 467,396 - +0.4 467,431 + +0.1 467,432 - -0.2 467,596 + Rv0388c 0.25 +0.4 467,701 - Rv0388c 0.45 -0.5 467,787 + Rv0388c 0.60 -0.4 467,787 + Rv0388c 0.60 -0.4 467,788 - Rv0388c 0.61 -0.1 467,868 + Rv0388c 0.75 -0.4 467,955 + -0.8 467,955 + -0.4 467,955 + +0.1 468,139 + +0.3 468,140 - +0.3 468,140 - -0.3 468,140 - +0.1 468,140 - -0.9 468,140 - -0.1 468,140 - +1.9 468,140 - -0.6 468,143 + -1.0 468,143 + +0.3 468,185 - -0.2 468,247 + -0.2 468,296 + +0.5 468,296 + -0.2 468,296 + -0.6 468,296 + +1.9 468,297 - -0.0
Or see this region's nucleotide sequence