Experiment: Glycine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0855 and Rv0856 are separated by 113 nucleotides Rv0856 and Rv0857 are separated by 27 nucleotides Rv0857 and Rv0858c overlap by 4 nucleotides
Rv0855: Rv0855 - Probable fatty-acid-CoA racemase Far, at 951,632 to 952,711
Rv0855
Rv0856: Rv0856 - Conserved hypothetical protein, at 952,825 to 953,229
Rv0856
Rv0857: Rv0857 - Conserved hypothetical protein, at 953,257 to 953,730
Rv0857
Rv0858c: Rv0858c - Probable N-succinyldiaminopimelate aminotransferase DapC (DAP-at), at 953,727 to 954,920
Rv0858c
Position (kb) 953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 952.308 kb on - strand, within Rv0855 at 952.337 kb on + strand, within Rv0855 at 952.337 kb on + strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.451 kb on + strand, within Rv0855 at 952.451 kb on + strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.531 kb on + strand, within Rv0855 at 952.531 kb on + strand, within Rv0855 at 952.778 kb on - strand at 952.778 kb on - strand at 952.897 kb on + strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.975 kb on + strand, within Rv0856 at 952.975 kb on + strand, within Rv0856 at 952.976 kb on - strand, within Rv0856 at 952.976 kb on - strand, within Rv0856 at 953.047 kb on + strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.266 kb on - strand at 953.266 kb on - strand at 953.273 kb on + strand at 953.273 kb on + strand at 953.274 kb on - strand at 953.474 kb on + strand, within Rv0857 at 953.554 kb on + strand, within Rv0857 at 953.967 kb on + strand, within Rv0858c at 953.984 kb on - strand, within Rv0858c at 954.134 kb on - strand, within Rv0858c at 954.309 kb on + strand, within Rv0858c at 954.320 kb on - strand, within Rv0858c at 954.514 kb on - strand, within Rv0858c at 954.676 kb on + strand, within Rv0858c
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine 10 mM (N) remove 952,308 - Rv0855 0.63 -2.1 952,337 + Rv0855 0.65 -0.2 952,337 + Rv0855 0.65 -0.8 952,338 - Rv0855 0.65 +0.3 952,338 - Rv0855 0.65 +0.3 952,338 - Rv0855 0.65 -0.4 952,451 + Rv0855 0.76 -1.1 952,451 + Rv0855 0.76 +0.7 952,452 - Rv0855 0.76 +0.3 952,452 - Rv0855 0.76 +0.0 952,452 - Rv0855 0.76 +0.1 952,531 + Rv0855 0.83 -1.6 952,531 + Rv0855 0.83 -0.4 952,778 - +1.8 952,778 - +0.3 952,897 + Rv0856 0.18 +0.1 952,898 - Rv0856 0.18 -0.6 952,898 - Rv0856 0.18 +1.1 952,898 - Rv0856 0.18 -0.6 952,975 + Rv0856 0.37 -0.3 952,975 + Rv0856 0.37 +0.0 952,976 - Rv0856 0.37 -0.4 952,976 - Rv0856 0.37 -0.1 953,047 + Rv0856 0.55 +0.0 953,048 - Rv0856 0.55 -0.4 953,048 - Rv0856 0.55 -0.4 953,048 - Rv0856 0.55 -1.0 953,048 - Rv0856 0.55 +0.3 953,266 - +1.3 953,266 - +1.2 953,273 + +0.0 953,273 + -0.6 953,274 - -0.1 953,474 + Rv0857 0.46 -1.0 953,554 + Rv0857 0.63 -0.6 953,967 + Rv0858c 0.20 +1.4 953,984 - Rv0858c 0.22 +0.6 954,134 - Rv0858c 0.34 -0.3 954,309 + Rv0858c 0.49 +0.1 954,320 - Rv0858c 0.50 +0.2 954,514 - Rv0858c 0.66 +0.8 954,676 + Rv0858c 0.79 -0.5
Or see this region's nucleotide sequence