Experiment: Glycine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0519c and Rv0520 are separated by 180 nucleotides Rv0520 and Rv0521 overlap by 8 nucleotides Rv0521 and Rv0522 are separated by 134 nucleotides
Rv0519c: Rv0519c - Possible conserved membrane protein, at 611,172 to 612,074
Rv0519c
Rv0520: Rv0520 - Possible methyltransferase/methylase (fragment), at 612,255 to 612,605
Rv0520
Rv0521: Rv0521 - Possible methyltransferase/methylase (fragment), at 612,598 to 612,903
Rv0521
Rv0522: Rv0522 - Probable GABA permease GabP (4-amino butyrate transport carrier) (GAMA-aminobutyrate permease), at 613,038 to 614,342
Rv0522
Position (kb) 612
613 Strain fitness (log2 ratio) -2
-1
0
1
2 at 611.300 kb on - strand, within Rv0519c at 611.380 kb on + strand, within Rv0519c at 611.381 kb on - strand, within Rv0519c at 611.507 kb on - strand, within Rv0519c at 611.553 kb on - strand, within Rv0519c at 611.632 kb on + strand, within Rv0519c at 611.632 kb on + strand, within Rv0519c at 611.633 kb on - strand, within Rv0519c at 612.193 kb on - strand at 612.254 kb on + strand at 612.255 kb on - strand at 612.314 kb on + strand, within Rv0520 at 612.314 kb on + strand, within Rv0520 at 612.315 kb on - strand, within Rv0520 at 612.400 kb on - strand, within Rv0520 at 612.555 kb on + strand, within Rv0520 at 612.597 kb on + strand at 612.598 kb on - strand at 612.598 kb on - strand at 612.674 kb on - strand, within Rv0521 at 612.674 kb on - strand, within Rv0521 at 612.759 kb on - strand, within Rv0521 at 612.846 kb on - strand, within Rv0521 at 612.956 kb on - strand at 612.988 kb on + strand at 612.988 kb on + strand at 612.989 kb on - strand at 612.993 kb on - strand at 613.047 kb on - strand at 613.128 kb on + strand at 613.219 kb on - strand, within Rv0522 at 613.269 kb on + strand, within Rv0522 at 613.328 kb on - strand, within Rv0522
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine 10 mM (N) remove 611,300 - Rv0519c 0.14 -0.8 611,380 + Rv0519c 0.23 +0.8 611,381 - Rv0519c 0.23 -0.2 611,507 - Rv0519c 0.37 -0.1 611,553 - Rv0519c 0.42 -0.1 611,632 + Rv0519c 0.51 -0.2 611,632 + Rv0519c 0.51 +0.6 611,633 - Rv0519c 0.51 -1.2 612,193 - +0.4 612,254 + -0.2 612,255 - -0.8 612,314 + Rv0520 0.17 -1.9 612,314 + Rv0520 0.17 -0.8 612,315 - Rv0520 0.17 -0.8 612,400 - Rv0520 0.41 -0.9 612,555 + Rv0520 0.85 +2.4 612,597 + +1.8 612,598 - +0.6 612,598 - -0.2 612,674 - Rv0521 0.25 -0.6 612,674 - Rv0521 0.25 -0.9 612,759 - Rv0521 0.53 -0.2 612,846 - Rv0521 0.81 -0.3 612,956 - +0.1 612,988 + -0.0 612,988 + -0.5 612,989 - -0.6 612,993 - +0.5 613,047 - -0.4 613,128 + -0.0 613,219 - Rv0522 0.14 +0.1 613,269 + Rv0522 0.18 -0.1 613,328 - Rv0522 0.22 +0.8
Or see this region's nucleotide sequence