Experiment: Glycine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0473 and Rv0474 are separated by 86 nucleotides Rv0474 and Rv0475 are separated by 353 nucleotides
Rv0473: Rv0473 - Possible conserved transmembrane protein, at 563,564 to 564,934
Rv0473
Rv0474: Rv0474 - Probable transcriptional regulatory protein, at 565,021 to 565,443
Rv0474
Rv0475: Rv0475 - Iron-regulated heparin binding hemagglutinin HbhA (adhesin), at 565,797 to 566,396
Rv0475
Position (kb) 565
566 Strain fitness (log2 ratio) -2
-1
0
1 at 564.036 kb on + strand, within Rv0473 at 564.036 kb on + strand, within Rv0473 at 564.260 kb on - strand, within Rv0473 at 564.410 kb on - strand, within Rv0473 at 564.540 kb on + strand, within Rv0473 at 564.540 kb on + strand, within Rv0473 at 564.541 kb on - strand, within Rv0473 at 564.756 kb on - strand, within Rv0473 at 564.908 kb on + strand at 564.908 kb on + strand at 564.975 kb on + strand at 564.976 kb on - strand at 564.976 kb on - strand at 565.009 kb on + strand at 565.009 kb on + strand at 565.015 kb on + strand at 565.016 kb on - strand at 565.198 kb on - strand, within Rv0474 at 565.261 kb on + strand, within Rv0474 at 565.262 kb on - strand, within Rv0474 at 565.262 kb on - strand, within Rv0474 at 565.326 kb on + strand, within Rv0474 at 565.365 kb on + strand, within Rv0474 at 565.369 kb on + strand, within Rv0474 at 565.369 kb on + strand, within Rv0474 at 565.369 kb on + strand, within Rv0474 at 565.380 kb on + strand, within Rv0474 at 565.380 kb on + strand, within Rv0474 at 565.380 kb on + strand, within Rv0474 at 565.380 kb on + strand, within Rv0474 at 565.380 kb on + strand, within Rv0474 at 565.381 kb on - strand, within Rv0474 at 565.592 kb on + strand at 565.592 kb on + strand at 565.592 kb on + strand at 565.592 kb on + strand at 565.592 kb on + strand at 565.592 kb on + strand at 565.592 kb on + strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.621 kb on + strand at 565.621 kb on + strand at 565.622 kb on - strand at 565.704 kb on - strand at 565.704 kb on - strand at 565.704 kb on - strand at 565.704 kb on - strand at 565.754 kb on + strand at 565.754 kb on + strand at 565.755 kb on - strand at 565.755 kb on - strand at 565.755 kb on - strand at 565.755 kb on - strand at 565.776 kb on + strand at 565.780 kb on + strand at 565.780 kb on + strand at 565.780 kb on + strand at 565.781 kb on - strand at 565.781 kb on - strand at 566.039 kb on + strand, within Rv0475 at 566.080 kb on - strand, within Rv0475 at 566.114 kb on - strand, within Rv0475 at 566.169 kb on + strand, within Rv0475 at 566.170 kb on - strand, within Rv0475 at 566.276 kb on + strand, within Rv0475 at 566.276 kb on + strand, within Rv0475 at 566.277 kb on - strand, within Rv0475 at 566.394 kb on + strand at 566.394 kb on + strand at 566.395 kb on - strand at 566.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine 10 mM (N) remove 564,036 + Rv0473 0.34 -0.2 564,036 + Rv0473 0.34 -0.5 564,260 - Rv0473 0.51 -0.6 564,410 - Rv0473 0.62 -0.6 564,540 + Rv0473 0.71 +1.1 564,540 + Rv0473 0.71 +0.5 564,541 - Rv0473 0.71 +1.4 564,756 - Rv0473 0.87 +0.1 564,908 + +0.8 564,908 + -0.1 564,975 + +0.3 564,976 - -0.6 564,976 - +0.4 565,009 + -0.6 565,009 + +0.1 565,015 + -0.1 565,016 - +0.0 565,198 - Rv0474 0.42 -0.0 565,261 + Rv0474 0.57 +0.8 565,262 - Rv0474 0.57 -0.6 565,262 - Rv0474 0.57 -2.3 565,326 + Rv0474 0.72 -0.2 565,365 + Rv0474 0.81 +0.8 565,369 + Rv0474 0.82 +0.2 565,369 + Rv0474 0.82 +0.8 565,369 + Rv0474 0.82 +0.6 565,380 + Rv0474 0.85 -0.4 565,380 + Rv0474 0.85 -1.4 565,380 + Rv0474 0.85 +0.2 565,380 + Rv0474 0.85 -0.6 565,380 + Rv0474 0.85 +0.4 565,381 - Rv0474 0.85 -0.1 565,592 + -0.5 565,592 + +0.7 565,592 + +0.5 565,592 + +1.0 565,592 + +0.5 565,592 + -1.1 565,592 + -0.1 565,593 - +0.5 565,593 - -0.8 565,593 - +0.4 565,593 - -0.3 565,593 - -0.9 565,593 - -0.7 565,621 + -0.0 565,621 + +1.5 565,622 - +0.1 565,704 - +0.5 565,704 - +0.2 565,704 - -1.0 565,704 - -0.3 565,754 + +0.5 565,754 + +1.0 565,755 - -0.5 565,755 - +0.4 565,755 - -1.5 565,755 - -0.6 565,776 + +0.2 565,780 + -0.4 565,780 + +0.1 565,780 + +0.4 565,781 - -0.4 565,781 - -1.9 566,039 + Rv0475 0.40 -1.2 566,080 - Rv0475 0.47 -0.4 566,114 - Rv0475 0.53 -0.5 566,169 + Rv0475 0.62 -0.7 566,170 - Rv0475 0.62 -0.8 566,276 + Rv0475 0.80 -0.2 566,276 + Rv0475 0.80 +0.2 566,277 - Rv0475 0.80 +0.9 566,394 + +0.2 566,394 + +0.2 566,395 - -0.3 566,395 - -0.1
Or see this region's nucleotide sequence