Experiment: Glycine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0374c and Rv0375c are separated by 14 nucleotides Rv0375c and Rv0376c are separated by 75 nucleotides Rv0376c and Rv0377 are separated by 48 nucleotides
Rv0374c: Rv0374c - Probable carbon monoxyde dehydrogenase (small chain), at 451,800 to 452,279
Rv0374c
Rv0375c: Rv0375c - Probable carbon monoxyde dehydrogenase (medium chain), at 452,294 to 453,154
Rv0375c
Rv0376c: Rv0376c - Conserved hypothetical protein, at 453,230 to 454,372
Rv0376c
Rv0377: Rv0377 - Probable transcriptional regulatory protein (probably LysR-family), at 454,421 to 455,386
Rv0377
Position (kb) 453
454
455 Strain fitness (log2 ratio) -2
-1
0
1 at 452.386 kb on - strand, within Rv0375c at 452.386 kb on - strand, within Rv0375c at 453.007 kb on - strand, within Rv0375c at 453.189 kb on - strand at 453.189 kb on - strand at 453.242 kb on + strand at 453.243 kb on - strand at 453.243 kb on - strand at 453.243 kb on - strand at 453.243 kb on - strand at 453.243 kb on - strand at 453.246 kb on + strand at 453.505 kb on - strand, within Rv0376c at 454.137 kb on - strand, within Rv0376c at 454.218 kb on + strand, within Rv0376c at 454.218 kb on + strand, within Rv0376c at 454.219 kb on - strand, within Rv0376c at 454.221 kb on - strand, within Rv0376c at 454.259 kb on + strand at 454.260 kb on - strand at 454.278 kb on - strand at 454.278 kb on - strand at 454.564 kb on + strand, within Rv0377 at 454.900 kb on - strand, within Rv0377 at 455.025 kb on + strand, within Rv0377 at 455.026 kb on - strand, within Rv0377 at 455.308 kb on + strand at 455.308 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine 10 mM (N) remove 452,386 - Rv0375c 0.11 +0.1 452,386 - Rv0375c 0.11 +0.5 453,007 - Rv0375c 0.83 -2.3 453,189 - +1.1 453,189 - -0.8 453,242 + -0.9 453,243 - -0.0 453,243 - -1.0 453,243 - +0.0 453,243 - -0.1 453,243 - -0.2 453,246 + -0.6 453,505 - Rv0376c 0.24 +0.3 454,137 - Rv0376c 0.79 -1.4 454,218 + Rv0376c 0.86 -1.8 454,218 + Rv0376c 0.86 -0.1 454,219 - Rv0376c 0.87 -1.0 454,221 - Rv0376c 0.87 -0.5 454,259 + +0.4 454,260 - -0.4 454,278 - +0.8 454,278 - +0.2 454,564 + Rv0377 0.15 -0.3 454,900 - Rv0377 0.50 -0.1 455,025 + Rv0377 0.63 +0.3 455,026 - Rv0377 0.63 -0.2 455,308 + +0.8 455,308 + +1.2
Or see this region's nucleotide sequence