Experiment: Glycine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0312 and Rv0313 are separated by 71 nucleotides Rv0313 and Rv0314c are separated by 2 nucleotides Rv0314c and Rv0315 are separated by 60 nucleotides Rv0315 and Rv0316 are separated by 48 nucleotides
Rv0312: Rv0312 - Conserved hypothetical proline and threonine rich protein, at 380,556 to 382,418
Rv0312
Rv0313: Rv0313 - Conserved protein, at 382,490 to 382,876
Rv0313
Rv0314c: Rv0314c - Possible conserved membrane protein, at 382,879 to 383,541
Rv0314c
Rv0315: Rv0315 - Possible beta-1,3-glucanase precursor, at 383,602 to 384,486
Rv0315
Rv0316: Rv0316 - Possible muconolactone isomerase, at 384,535 to 385,149
Rv0316
Position (kb) 382
383
384 Strain fitness (log2 ratio) -2
-1
0
1 at 382.032 kb on - strand, within Rv0312 at 382.459 kb on + strand at 382.459 kb on + strand at 382.463 kb on - strand at 382.463 kb on - strand at 382.712 kb on - strand, within Rv0313 at 382.751 kb on + strand, within Rv0313 at 382.751 kb on + strand, within Rv0313 at 382.752 kb on - strand, within Rv0313 at 382.874 kb on + strand at 382.875 kb on - strand at 382.875 kb on - strand at 382.875 kb on - strand at 382.940 kb on + strand at 382.940 kb on + strand at 383.372 kb on + strand, within Rv0314c at 383.372 kb on + strand, within Rv0314c at 383.372 kb on + strand, within Rv0314c at 383.376 kb on + strand, within Rv0314c at 383.376 kb on + strand, within Rv0314c at 383.376 kb on + strand, within Rv0314c at 383.377 kb on - strand, within Rv0314c at 383.377 kb on - strand, within Rv0314c at 383.405 kb on + strand, within Rv0314c at 383.406 kb on - strand, within Rv0314c at 383.412 kb on - strand, within Rv0314c at 383.412 kb on - strand, within Rv0314c at 383.548 kb on + strand at 383.548 kb on + strand at 383.549 kb on - strand at 383.549 kb on - strand at 383.552 kb on + strand at 383.552 kb on + strand at 383.553 kb on - strand at 383.553 kb on - strand at 383.593 kb on + strand at 383.607 kb on + strand at 383.607 kb on + strand at 383.608 kb on - strand at 383.608 kb on - strand at 383.608 kb on - strand at 383.608 kb on - strand at 383.897 kb on - strand, within Rv0315 at 384.133 kb on + strand, within Rv0315 at 384.134 kb on - strand, within Rv0315 at 384.265 kb on + strand, within Rv0315 at 384.265 kb on + strand, within Rv0315 at 384.266 kb on - strand, within Rv0315 at 384.266 kb on - strand, within Rv0315 at 384.302 kb on - strand, within Rv0315 at 384.302 kb on - strand, within Rv0315 at 384.376 kb on + strand, within Rv0315 at 384.377 kb on - strand, within Rv0315 at 384.377 kb on - strand, within Rv0315 at 384.484 kb on + strand at 384.512 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine 10 mM (N) remove 382,032 - Rv0312 0.79 -0.7 382,459 + -0.5 382,459 + -0.6 382,463 - -0.5 382,463 - -0.5 382,712 - Rv0313 0.57 +0.9 382,751 + Rv0313 0.67 -0.3 382,751 + Rv0313 0.67 -2.6 382,752 - Rv0313 0.68 +0.0 382,874 + -1.3 382,875 - +0.7 382,875 - -0.2 382,875 - +0.5 382,940 + -1.4 382,940 + -0.3 383,372 + Rv0314c 0.74 +0.1 383,372 + Rv0314c 0.74 -0.1 383,372 + Rv0314c 0.74 -1.2 383,376 + Rv0314c 0.75 -1.0 383,376 + Rv0314c 0.75 -0.8 383,376 + Rv0314c 0.75 -2.1 383,377 - Rv0314c 0.75 -0.9 383,377 - Rv0314c 0.75 -1.6 383,405 + Rv0314c 0.79 -0.8 383,406 - Rv0314c 0.79 -0.3 383,412 - Rv0314c 0.80 -0.1 383,412 - Rv0314c 0.80 -1.1 383,548 + -0.2 383,548 + +0.3 383,549 - +1.3 383,549 - -0.2 383,552 + -0.1 383,552 + -0.5 383,553 - -0.5 383,553 - -0.1 383,593 + +0.2 383,607 + +1.2 383,607 + +0.1 383,608 - -0.2 383,608 - +0.1 383,608 - -0.5 383,608 - -0.2 383,897 - Rv0315 0.33 -0.9 384,133 + Rv0315 0.60 +0.4 384,134 - Rv0315 0.60 -0.7 384,265 + Rv0315 0.75 +1.1 384,265 + Rv0315 0.75 -0.4 384,266 - Rv0315 0.75 -0.4 384,266 - Rv0315 0.75 -0.6 384,302 - Rv0315 0.79 -0.3 384,302 - Rv0315 0.79 -0.7 384,376 + Rv0315 0.87 -0.6 384,377 - Rv0315 0.88 -0.6 384,377 - Rv0315 0.88 +0.3 384,484 + -0.1 384,512 + -1.3
Or see this region's nucleotide sequence