Experiment: Glycine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0240 and Rv0241c are separated by 29 nucleotides Rv0241c and Rv0242c are separated by 10 nucleotides Rv0242c and Rv0243 are separated by 141 nucleotides
Rv0240: Rv0240 - Possible toxin VapC24. Contains PIN domain., at 289,345 to 289,782
Rv0240
Rv0241c: Rv0241c - Probable 3-hydroxyacyl-thioester dehydratase HtdX, at 289,812 to 290,654
Rv0241c
Rv0242c: Rv0242c - Probable 3-oxoacyl-[acyl-carrier protein] reductase FabG4 (3-ketoacyl-acyl carrier protein reductase), at 290,665 to 292,029
Rv0242c
Rv0243: Rv0243 - Probable acetyl-CoA acyltransferase FadA2 (3-ketoacyl-CoA thiolase) (beta-ketothiolase), at 292,171 to 293,493
Rv0243
Position (kb) 290
291
292
293 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 289.814 kb on - strand at 289.860 kb on - strand at 289.904 kb on - strand, within Rv0241c at 289.904 kb on - strand, within Rv0241c at 289.985 kb on + strand, within Rv0241c at 290.389 kb on - strand, within Rv0241c at 290.951 kb on + strand, within Rv0242c at 291.467 kb on + strand, within Rv0242c at 291.546 kb on - strand, within Rv0242c at 291.546 kb on - strand, within Rv0242c at 291.546 kb on - strand, within Rv0242c at 291.712 kb on - strand, within Rv0242c at 291.828 kb on - strand, within Rv0242c at 292.071 kb on + strand at 292.072 kb on - strand at 292.077 kb on + strand at 292.077 kb on + strand at 292.078 kb on - strand at 292.078 kb on - strand at 292.078 kb on - strand at 292.093 kb on + strand at 292.094 kb on - strand at 292.099 kb on - strand at 292.121 kb on + strand at 292.121 kb on + strand at 292.122 kb on - strand at 292.124 kb on + strand at 292.124 kb on + strand at 292.125 kb on - strand at 292.220 kb on + strand at 292.398 kb on - strand, within Rv0243 at 292.398 kb on - strand, within Rv0243 at 292.435 kb on + strand, within Rv0243 at 292.804 kb on - strand, within Rv0243
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine 10 mM (N) remove 289,814 - -0.1 289,860 - -0.6 289,904 - Rv0241c 0.11 -1.1 289,904 - Rv0241c 0.11 -1.1 289,985 + Rv0241c 0.21 -2.1 290,389 - Rv0241c 0.68 -1.0 290,951 + Rv0242c 0.21 -1.1 291,467 + Rv0242c 0.59 +2.8 291,546 - Rv0242c 0.65 -1.2 291,546 - Rv0242c 0.65 -1.4 291,546 - Rv0242c 0.65 -1.3 291,712 - Rv0242c 0.77 -1.3 291,828 - Rv0242c 0.85 +0.3 292,071 + -0.7 292,072 - +1.0 292,077 + -0.2 292,077 + +0.1 292,078 - +0.6 292,078 - -0.6 292,078 - +0.1 292,093 + +0.5 292,094 - +0.1 292,099 - +0.0 292,121 + -0.6 292,121 + +0.3 292,122 - -0.2 292,124 + +1.0 292,124 + -0.2 292,125 - +0.1 292,220 + -1.4 292,398 - Rv0243 0.17 -1.4 292,398 - Rv0243 0.17 -1.7 292,435 + Rv0243 0.20 -1.2 292,804 - Rv0243 0.48 -1.0
Or see this region's nucleotide sequence