Experiment: Glycine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0200 and Rv0201c overlap by 4 nucleotides Rv0201c and Rv0202c overlap by 4 nucleotides Rv0202c and Rv0203 are separated by 221 nucleotides Rv0203 and Rv0204c are separated by 51 nucleotides
Rv0200: Rv0200 - Possible conserved transmembrane protein, at 237,206 to 237,895
Rv0200
Rv0201c: Rv0201c - Conserved protein, at 237,892 to 238,395
Rv0201c
Rv0202c: Rv0202c - Probable conserved transmembrane transport protein MmpL11, at 238,392 to 241,292
Rv0202c
Rv0203: Rv0203 - Possible exported protein, at 241,514 to 241,924
Rv0203
Rv0204c: Rv0204c - Probable conserved transmembrane protein, at 241,976 to 243,214
Rv0204c
Position (kb) 238
239
240
241
242 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 237.659 kb on + strand, within Rv0200 at 237.659 kb on + strand, within Rv0200 at 237.659 kb on + strand, within Rv0200 at 238.123 kb on - strand, within Rv0201c at 238.243 kb on + strand, within Rv0201c at 238.300 kb on - strand, within Rv0201c at 238.573 kb on + strand at 238.623 kb on - strand at 238.961 kb on + strand, within Rv0202c at 238.961 kb on + strand, within Rv0202c at 239.302 kb on - strand, within Rv0202c at 239.392 kb on + strand, within Rv0202c at 239.465 kb on - strand, within Rv0202c at 239.465 kb on - strand, within Rv0202c at 239.465 kb on - strand, within Rv0202c at 239.591 kb on - strand, within Rv0202c at 239.856 kb on + strand, within Rv0202c at 239.970 kb on - strand, within Rv0202c at 240.303 kb on + strand, within Rv0202c at 240.303 kb on + strand, within Rv0202c at 240.304 kb on - strand, within Rv0202c at 240.403 kb on + strand, within Rv0202c at 240.404 kb on - strand, within Rv0202c at 240.404 kb on - strand, within Rv0202c at 240.547 kb on + strand, within Rv0202c at 240.547 kb on + strand, within Rv0202c at 240.731 kb on + strand, within Rv0202c at 240.817 kb on + strand, within Rv0202c at 240.817 kb on + strand, within Rv0202c at 240.818 kb on - strand, within Rv0202c at 240.818 kb on - strand, within Rv0202c at 240.870 kb on + strand, within Rv0202c at 240.943 kb on + strand, within Rv0202c at 241.014 kb on + strand at 241.015 kb on - strand at 241.055 kb on - strand at 241.058 kb on + strand at 241.059 kb on - strand at 241.059 kb on - strand at 241.183 kb on - strand at 241.210 kb on + strand at 241.210 kb on + strand at 241.348 kb on - strand at 241.558 kb on - strand, within Rv0203 at 241.691 kb on + strand, within Rv0203 at 241.692 kb on - strand, within Rv0203 at 241.799 kb on - strand, within Rv0203 at 241.923 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine 10 mM (N) remove 237,659 + Rv0200 0.66 -1.2 237,659 + Rv0200 0.66 -0.7 237,659 + Rv0200 0.66 -0.5 238,123 - Rv0201c 0.46 -0.6 238,243 + Rv0201c 0.70 -0.1 238,300 - Rv0201c 0.81 -1.4 238,573 + -0.7 238,623 - -1.4 238,961 + Rv0202c 0.20 -2.0 238,961 + Rv0202c 0.20 -1.0 239,302 - Rv0202c 0.31 -1.1 239,392 + Rv0202c 0.34 -2.8 239,465 - Rv0202c 0.37 -1.7 239,465 - Rv0202c 0.37 -2.0 239,465 - Rv0202c 0.37 -2.0 239,591 - Rv0202c 0.41 -0.4 239,856 + Rv0202c 0.50 +0.3 239,970 - Rv0202c 0.54 -1.5 240,303 + Rv0202c 0.66 -4.1 240,303 + Rv0202c 0.66 -3.1 240,304 - Rv0202c 0.66 -0.4 240,403 + Rv0202c 0.69 -2.1 240,404 - Rv0202c 0.69 -1.8 240,404 - Rv0202c 0.69 -2.6 240,547 + Rv0202c 0.74 -1.4 240,547 + Rv0202c 0.74 -0.8 240,731 + Rv0202c 0.81 -2.1 240,817 + Rv0202c 0.84 -2.5 240,817 + Rv0202c 0.84 -3.6 240,818 - Rv0202c 0.84 -1.3 240,818 - Rv0202c 0.84 +0.2 240,870 + Rv0202c 0.85 -1.8 240,943 + Rv0202c 0.88 +0.6 241,014 + -2.5 241,015 - -1.4 241,055 - -1.2 241,058 + -3.2 241,059 - -1.2 241,059 - -0.6 241,183 - -2.7 241,210 + +0.3 241,210 + -0.1 241,348 - -0.2 241,558 - Rv0203 0.11 -1.3 241,691 + Rv0203 0.43 -0.4 241,692 - Rv0203 0.43 +0.2 241,799 - Rv0203 0.69 +0.7 241,923 - +0.1
Or see this region's nucleotide sequence