Experiment: Glycine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0038 and Rv0039c are separated by 91 nucleotides Rv0039c and Rv0040c are separated by 81 nucleotides Rv0040c and Rv0041 are separated by 196 nucleotides
Rv0038: Rv0038 - Conserved protein, at 41,304 to 41,912
Rv0038
Rv0039c: Rv0039c - Possible conserved transmembrane protein, at 42,004 to 42,351
Rv0039c
Rv0040c: Rv0040c - Secreted proline rich protein Mtc28 (proline rich 28 kDa antigen), at 42,433 to 43,365
Rv0040c
Rv0041: Rv0041 - Probable leucyl-tRNA synthetase LeuS (leucine--tRNA ligase) (LEURS), at 43,562 to 46,471
Rv0041
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.496 kb on + strand, within Rv0038 at 41.497 kb on - strand, within Rv0038 at 41.497 kb on - strand, within Rv0038 at 41.633 kb on - strand, within Rv0038 at 41.911 kb on - strand at 41.916 kb on - strand at 42.208 kb on + strand, within Rv0039c at 42.209 kb on - strand, within Rv0039c at 42.276 kb on + strand, within Rv0039c at 42.362 kb on + strand at 42.363 kb on - strand at 42.363 kb on - strand at 42.493 kb on + strand at 42.644 kb on + strand, within Rv0040c at 42.644 kb on + strand, within Rv0040c at 42.807 kb on - strand, within Rv0040c at 42.807 kb on - strand, within Rv0040c at 42.852 kb on + strand, within Rv0040c at 42.852 kb on + strand, within Rv0040c at 42.853 kb on - strand, within Rv0040c at 42.854 kb on + strand, within Rv0040c at 42.854 kb on + strand, within Rv0040c at 42.855 kb on - strand, within Rv0040c at 42.855 kb on - strand, within Rv0040c at 42.881 kb on + strand, within Rv0040c at 43.421 kb on + strand at 43.422 kb on - strand at 43.547 kb on + strand at 43.548 kb on - strand at 43.550 kb on - strand at 43.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine 10 mM (N) remove 41,496 + Rv0038 0.32 -0.0 41,497 - Rv0038 0.32 -0.8 41,497 - Rv0038 0.32 +0.2 41,633 - Rv0038 0.54 +1.1 41,911 - +1.8 41,916 - +0.5 42,208 + Rv0039c 0.59 +0.9 42,209 - Rv0039c 0.59 -0.2 42,276 + Rv0039c 0.78 -0.1 42,362 + +0.0 42,363 - +0.9 42,363 - +0.2 42,493 + -0.7 42,644 + Rv0040c 0.23 -1.3 42,644 + Rv0040c 0.23 -0.9 42,807 - Rv0040c 0.40 -1.0 42,807 - Rv0040c 0.40 -1.0 42,852 + Rv0040c 0.45 -1.1 42,852 + Rv0040c 0.45 -0.2 42,853 - Rv0040c 0.45 -0.6 42,854 + Rv0040c 0.45 -1.3 42,854 + Rv0040c 0.45 -1.7 42,855 - Rv0040c 0.45 -1.3 42,855 - Rv0040c 0.45 -2.8 42,881 + Rv0040c 0.48 -0.7 43,421 + -0.6 43,422 - -0.6 43,547 + +1.1 43,548 - -1.2 43,550 - +1.1 43,550 - -0.8
Or see this region's nucleotide sequence