Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2897c

Experiment: L-Glutamic 10 mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2896c and Rv2897c overlap by 4 nucleotidesRv2897c and Rv2898c overlap by 1 nucleotidesRv2898c and Rv2899c are separated by 247 nucleotides Rv2896c: Rv2896c - Conserved hypothetical protein, at 3,205,265 to 3,206,434 Rv2896c Rv2897c: Rv2897c - Conserved hypothetical protein, at 3,206,431 to 3,207,942 Rv2897c Rv2898c: Rv2898c - Conserved hypothetical protein, at 3,207,942 to 3,208,328 Rv2898c Rv2899c: Rv2899c - Possible FdhD protein homolog, at 3,208,576 to 3,209,406 Rv2899c Position (kb) 3206 3207 3208Strain fitness (log2 ratio) -2 -1 0 1at 3205.562 kb on - strand, within Rv2896cat 3205.606 kb on + strand, within Rv2896cat 3205.769 kb on + strand, within Rv2896cat 3205.770 kb on - strand, within Rv2896cat 3205.806 kb on + strand, within Rv2896cat 3205.807 kb on - strand, within Rv2896cat 3205.844 kb on + strand, within Rv2896cat 3205.844 kb on + strand, within Rv2896cat 3205.845 kb on - strand, within Rv2896cat 3205.845 kb on - strand, within Rv2896cat 3205.845 kb on - strand, within Rv2896cat 3205.896 kb on - strand, within Rv2896cat 3206.403 kb on + strandat 3206.403 kb on + strandat 3206.834 kb on + strand, within Rv2897cat 3208.262 kb on - strand, within Rv2898cat 3208.435 kb on - strandat 3208.485 kb on + strandat 3208.485 kb on + strandat 3208.578 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic 10 mM (N)
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3,205,562 - Rv2896c 0.25 -1.1
3,205,606 + Rv2896c 0.29 -0.0
3,205,769 + Rv2896c 0.43 -0.2
3,205,770 - Rv2896c 0.43 -0.5
3,205,806 + Rv2896c 0.46 -2.0
3,205,807 - Rv2896c 0.46 -1.6
3,205,844 + Rv2896c 0.49 +0.5
3,205,844 + Rv2896c 0.49 -0.2
3,205,845 - Rv2896c 0.50 -0.1
3,205,845 - Rv2896c 0.50 +1.1
3,205,845 - Rv2896c 0.50 -0.3
3,205,896 - Rv2896c 0.54 -0.5
3,206,403 + -1.4
3,206,403 + -0.5
3,206,834 + Rv2897c 0.27 -0.0
3,208,262 - Rv2898c 0.83 -0.1
3,208,435 - -1.3
3,208,485 + -0.2
3,208,485 + -0.2
3,208,578 - -0.4

Or see this region's nucleotide sequence