Experiment: L-Glutamic 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0787 and Rv0787A are separated by 105 nucleotides Rv0787A and Rv0788 overlap by 4 nucleotides Rv0788 and Rv0789c are separated by 16 nucleotides Rv0789c and Rv0790c are separated by 21 nucleotides
Rv0787: Rv0787 - Unknown protein, at 881,459 to 882,418
Rv0787
Rv0787A: Rv0787A - Conserved protein, at 882,524 to 882,763
Rv0787A
Rv0788: Rv0788 - Probable phosphoribosylformylglycinamidine synthase I PURG (FGAM synthase I), at 882,760 to 883,434
Rv0788
Rv0789c: Rv0789c - Hypothetical protein, at 883,451 to 884,050
Rv0789c
Rv0790c: Rv0790c - Hypothetical protein, at 884,072 to 884,800
Rv0790c
Position (kb) 882
883
884 Strain fitness (log2 ratio) -2
-1
0
1 at 881.812 kb on + strand, within Rv0787 at 881.866 kb on + strand, within Rv0787 at 882.258 kb on - strand, within Rv0787 at 882.263 kb on + strand, within Rv0787 at 882.264 kb on - strand, within Rv0787 at 882.344 kb on - strand at 882.398 kb on + strand at 882.399 kb on - strand at 882.443 kb on - strand at 883.493 kb on + strand at 883.493 kb on + strand at 883.728 kb on + strand, within Rv0789c at 883.782 kb on - strand, within Rv0789c at 883.875 kb on + strand, within Rv0789c at 884.150 kb on + strand, within Rv0790c at 884.151 kb on - strand, within Rv0790c at 884.232 kb on + strand, within Rv0790c at 884.232 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.377 kb on - strand, within Rv0790c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic 10 mM (N) remove 881,812 + Rv0787 0.37 -0.2 881,866 + Rv0787 0.42 -0.8 882,258 - Rv0787 0.83 +0.5 882,263 + Rv0787 0.84 -0.3 882,264 - Rv0787 0.84 -0.5 882,344 - -0.5 882,398 + -0.9 882,399 - -0.7 882,443 - -0.9 883,493 + +1.2 883,493 + -0.5 883,728 + Rv0789c 0.46 +0.3 883,782 - Rv0789c 0.55 +0.8 883,875 + Rv0789c 0.71 +0.3 884,150 + Rv0790c 0.11 -0.1 884,151 - Rv0790c 0.11 +0.1 884,232 + Rv0790c 0.22 +0.8 884,232 + Rv0790c 0.22 -0.8 884,376 + Rv0790c 0.42 -1.5 884,376 + Rv0790c 0.42 +1.7 884,376 + Rv0790c 0.42 -1.2 884,376 + Rv0790c 0.42 -0.1 884,376 + Rv0790c 0.42 -1.9 884,377 - Rv0790c 0.42 +0.2
Or see this region's nucleotide sequence