Experiment: L-Glutamic 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2922c and Rv2922A are separated by 11 nucleotides Rv2922A and Rv2923c overlap by 14 nucleotides Rv2923c and Rv2924c are separated by 101 nucleotides Rv2924c and Rv2925c are separated by 358 nucleotides
Rv2922c: Rv2922c - Probable chromosome partition protein Smc, at 3,234,189 to 3,237,806
Rv2922c
Rv2922A: Rv2922A - Probable acylphosphatase AcyP (acylphosphate phosphohydrolase), at 3,237,818 to 3,238,099
Rv2922A
Rv2923c: Rv2923c - Conserved protein, at 3,238,086 to 3,238,499
Rv2923c
Rv2924c: Rv2924c - Probable formamidopyrimidine-DNA glycosylase Fpg (FAPY-DNA glycosylase), at 3,238,601 to 3,239,470
Rv2924c
Rv2925c: Rv2925c - Probable ribonuclease III Rnc (RNase III), at 3,239,829 to 3,240,551
Rv2925c
Position (kb)
3238
3239
3240 Strain fitness (log2 ratio)
-2
-1
0
1 at 3238.256 kb on - strand, within Rv2923c at 3238.399 kb on - strand, within Rv2923c at 3238.636 kb on - strand at 3238.655 kb on - strand at 3238.670 kb on + strand at 3238.670 kb on + strand at 3238.764 kb on + strand, within Rv2924c at 3238.765 kb on - strand, within Rv2924c at 3238.765 kb on - strand, within Rv2924c at 3238.857 kb on - strand, within Rv2924c at 3238.857 kb on - strand, within Rv2924c at 3238.914 kb on + strand, within Rv2924c at 3238.915 kb on - strand, within Rv2924c at 3239.252 kb on - strand, within Rv2924c at 3239.252 kb on - strand, within Rv2924c at 3239.266 kb on + strand, within Rv2924c at 3239.286 kb on + strand, within Rv2924c at 3239.286 kb on + strand, within Rv2924c at 3239.286 kb on + strand, within Rv2924c at 3239.287 kb on - strand, within Rv2924c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic 10 mM (N) remove 3,238,256 - Rv2923c 0.41 -0.5 3,238,399 - Rv2923c 0.76 -0.1 3,238,636 - -0.7 3,238,655 - +1.3 3,238,670 + -0.6 3,238,670 + -0.5 3,238,764 + Rv2924c 0.19 -0.7 3,238,765 - Rv2924c 0.19 -0.1 3,238,765 - Rv2924c 0.19 -0.2 3,238,857 - Rv2924c 0.29 -0.9 3,238,857 - Rv2924c 0.29 -0.7 3,238,914 + Rv2924c 0.36 -0.5 3,238,915 - Rv2924c 0.36 -1.2 3,239,252 - Rv2924c 0.75 -0.6 3,239,252 - Rv2924c 0.75 -1.3 3,239,266 + Rv2924c 0.76 -0.4 3,239,286 + Rv2924c 0.79 -2.5 3,239,286 + Rv2924c 0.79 -0.5 3,239,286 + Rv2924c 0.79 +1.3 3,239,287 - Rv2924c 0.79 -0.4
Or see this region's nucleotide sequence