Experiment: L-Glutamic 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0876c and Rv0877 are separated by 137 nucleotides Rv0877 and Rv0878c are separated by 8 nucleotides Rv0878c and Rv0879c are separated by 277 nucleotides Rv0879c and Rv0880 are separated by 177 nucleotides
Rv0876c: Rv0876c - Possible conserved transmembrane protein, at 974,291 to 975,937
Rv0876c
Rv0877: Rv0877 - Conserved hypothetical protein, at 976,075 to 976,863
Rv0877
Rv0878c: Rv0878c - PPE family protein PPE13, at 976,872 to 978,203
Rv0878c
Rv0879c: Rv0879c - Possible conserved transmembrane protein, at 978,481 to 978,756
Rv0879c
Rv0880: Rv0880 - Possible transcriptional regulatory protein (possibly MarR-family), at 978,934 to 979,365
Rv0880
Position (kb) 976
977
978
979 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 976.045 kb on - strand at 976.045 kb on - strand at 976.058 kb on + strand at 976.214 kb on - strand, within Rv0877 at 976.315 kb on + strand, within Rv0877 at 976.316 kb on - strand, within Rv0877 at 976.369 kb on - strand, within Rv0877 at 976.369 kb on - strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.604 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.703 kb on + strand, within Rv0877 at 976.703 kb on + strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.751 kb on - strand, within Rv0877 at 976.807 kb on + strand at 976.808 kb on - strand at 976.816 kb on + strand at 976.817 kb on - strand at 976.817 kb on - strand at 976.861 kb on + strand at 976.861 kb on + strand at 976.862 kb on - strand at 976.862 kb on - strand at 976.932 kb on + strand at 976.933 kb on - strand at 976.933 kb on - strand at 976.933 kb on - strand at 976.942 kb on - strand at 976.945 kb on + strand at 977.005 kb on - strand at 977.052 kb on + strand, within Rv0878c at 977.084 kb on + strand, within Rv0878c at 977.085 kb on - strand, within Rv0878c at 977.085 kb on - strand, within Rv0878c at 977.148 kb on - strand, within Rv0878c at 977.148 kb on - strand, within Rv0878c at 977.148 kb on - strand, within Rv0878c at 977.288 kb on + strand, within Rv0878c at 977.495 kb on + strand, within Rv0878c at 977.515 kb on + strand, within Rv0878c at 977.515 kb on + strand, within Rv0878c at 977.515 kb on + strand, within Rv0878c at 977.734 kb on + strand, within Rv0878c at 977.777 kb on - strand, within Rv0878c at 977.777 kb on - strand, within Rv0878c at 977.777 kb on - strand, within Rv0878c at 977.905 kb on + strand, within Rv0878c at 977.905 kb on + strand, within Rv0878c at 977.905 kb on + strand, within Rv0878c at 977.906 kb on - strand, within Rv0878c at 977.906 kb on - strand, within Rv0878c at 977.906 kb on - strand, within Rv0878c at 977.906 kb on - strand, within Rv0878c at 977.906 kb on - strand, within Rv0878c at 977.907 kb on + strand, within Rv0878c at 977.907 kb on + strand, within Rv0878c at 977.907 kb on + strand, within Rv0878c at 977.908 kb on - strand, within Rv0878c at 977.980 kb on + strand, within Rv0878c at 978.049 kb on - strand, within Rv0878c at 978.157 kb on + strand at 978.158 kb on - strand at 978.298 kb on - strand at 978.439 kb on + strand at 978.440 kb on - strand at 978.482 kb on + strand at 978.482 kb on + strand at 978.483 kb on - strand at 978.716 kb on - strand, within Rv0879c at 978.770 kb on - strand at 978.770 kb on - strand at 978.831 kb on + strand at 978.832 kb on - strand at 978.832 kb on - strand at 978.905 kb on + strand at 978.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic 10 mM (N) remove 976,045 - -1.0 976,045 - -0.5 976,058 + -0.1 976,214 - Rv0877 0.18 +1.5 976,315 + Rv0877 0.30 +2.4 976,316 - Rv0877 0.31 -1.0 976,369 - Rv0877 0.37 -0.3 976,369 - Rv0877 0.37 -1.3 976,603 + Rv0877 0.67 -1.6 976,603 + Rv0877 0.67 -0.1 976,603 + Rv0877 0.67 -0.8 976,604 - Rv0877 0.67 -0.2 976,621 - Rv0877 0.69 -0.1 976,621 - Rv0877 0.69 +0.7 976,621 - Rv0877 0.69 -0.4 976,621 - Rv0877 0.69 +0.7 976,621 - Rv0877 0.69 +0.4 976,703 + Rv0877 0.80 +0.0 976,703 + Rv0877 0.80 -0.3 976,704 - Rv0877 0.80 +0.9 976,704 - Rv0877 0.80 +0.1 976,704 - Rv0877 0.80 +0.8 976,704 - Rv0877 0.80 -1.0 976,704 - Rv0877 0.80 -0.2 976,751 - Rv0877 0.86 -0.5 976,807 + +3.4 976,808 - -0.9 976,816 + -0.4 976,817 - -0.6 976,817 - -0.2 976,861 + -0.4 976,861 + +0.6 976,862 - -0.3 976,862 - +0.4 976,932 + -0.9 976,933 - +0.4 976,933 - +2.4 976,933 - -0.2 976,942 - -0.3 976,945 + +0.6 977,005 - -0.8 977,052 + Rv0878c 0.14 -0.3 977,084 + Rv0878c 0.16 -0.4 977,085 - Rv0878c 0.16 -2.3 977,085 - Rv0878c 0.16 -0.7 977,148 - Rv0878c 0.21 -0.1 977,148 - Rv0878c 0.21 +0.0 977,148 - Rv0878c 0.21 -0.2 977,288 + Rv0878c 0.31 -1.0 977,495 + Rv0878c 0.47 -2.1 977,515 + Rv0878c 0.48 -0.7 977,515 + Rv0878c 0.48 -0.2 977,515 + Rv0878c 0.48 -0.6 977,734 + Rv0878c 0.65 -0.4 977,777 - Rv0878c 0.68 -1.9 977,777 - Rv0878c 0.68 +2.4 977,777 - Rv0878c 0.68 -0.1 977,905 + Rv0878c 0.78 +0.3 977,905 + Rv0878c 0.78 -0.7 977,905 + Rv0878c 0.78 -0.2 977,906 - Rv0878c 0.78 -0.2 977,906 - Rv0878c 0.78 +0.1 977,906 - Rv0878c 0.78 -0.5 977,906 - Rv0878c 0.78 -0.3 977,906 - Rv0878c 0.78 -0.7 977,907 + Rv0878c 0.78 +2.0 977,907 + Rv0878c 0.78 -0.0 977,907 + Rv0878c 0.78 -1.7 977,908 - Rv0878c 0.78 -0.3 977,980 + Rv0878c 0.83 -0.5 978,049 - Rv0878c 0.88 -0.0 978,157 + +0.8 978,158 - +3.4 978,298 - +0.8 978,439 + -0.6 978,440 - -0.4 978,482 + +0.1 978,482 + +1.6 978,483 - +0.5 978,716 - Rv0879c 0.85 -1.8 978,770 - -0.2 978,770 - -0.8 978,831 + -0.3 978,832 - -1.2 978,832 - -0.2 978,905 + -0.7 978,924 - -0.4
Or see this region's nucleotide sequence