Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2372c

Experiment: L-Glutamine 10 mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2370c and Rv2371 are separated by 194 nucleotidesRv2371 and Rv2372c are separated by 98 nucleotidesRv2372c and Rv2373c are separated by 13 nucleotides Rv2370c: Rv2370c - Conserved hypothetical protein, at 2,650,245 to 2,651,558 Rv2370c Rv2371: Rv2371 - PE-PGRS family protein PE_PGRS40, at 2,651,753 to 2,651,938 Rv2371 Rv2372c: Rv2372c - Conserved hypothetical protein, at 2,652,037 to 2,652,825 Rv2372c Rv2373c: Rv2373c - Probable chaperone protein DnaJ2, at 2,652,839 to 2,653,987 Rv2373c Position (kb) 2652 2653Strain fitness (log2 ratio) -2 -1 0 1 2at 2651.084 kb on - strand, within Rv2370cat 2651.084 kb on - strand, within Rv2370cat 2651.271 kb on + strand, within Rv2370cat 2651.272 kb on - strand, within Rv2370cat 2651.304 kb on + strand, within Rv2370cat 2651.413 kb on - strand, within Rv2370cat 2651.569 kb on + strandat 2651.570 kb on - strandat 2651.578 kb on - strandat 2651.645 kb on + strandat 2651.734 kb on + strandat 2651.734 kb on + strandat 2651.735 kb on - strandat 2652.060 kb on - strandat 2652.060 kb on - strandat 2652.350 kb on - strand, within Rv2372cat 2652.625 kb on - strand, within Rv2372cat 2652.625 kb on - strand, within Rv2372cat 2652.625 kb on - strand, within Rv2372cat 2652.766 kb on + strandat 2652.767 kb on - strandat 2652.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine 10 mM (N)
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2,651,084 - Rv2370c 0.64 +0.9
2,651,084 - Rv2370c 0.64 -0.3
2,651,271 + Rv2370c 0.78 +0.0
2,651,272 - Rv2370c 0.78 -0.2
2,651,304 + Rv2370c 0.81 -0.0
2,651,413 - Rv2370c 0.89 +0.2
2,651,569 + -0.0
2,651,570 - -1.9
2,651,578 - -0.8
2,651,645 + +2.1
2,651,734 + -0.4
2,651,734 + -1.3
2,651,735 - -0.3
2,652,060 - +0.1
2,652,060 - -0.3
2,652,350 - Rv2372c 0.40 -1.6
2,652,625 - Rv2372c 0.75 -0.8
2,652,625 - Rv2372c 0.75 -1.3
2,652,625 - Rv2372c 0.75 -0.2
2,652,766 + -0.6
2,652,767 - -0.4
2,652,807 - +0.2

Or see this region's nucleotide sequence