Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3663c

Experiment: L-Glutamine 10 mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv3662c and Rv3663c overlap by 4 nucleotidesRv3663c and Rv3664c overlap by 4 nucleotidesRv3664c and Rv3665c are separated by 55 nucleotides Rv3662c: Rv3662c - Conserved hypothetical protein, at 4,101,265 to 4,102,035 Rv3662c Rv3663c: Rv3663c - Probable dipeptide-transport ATP-binding protein ABC transporter DppD, at 4,102,032 to 4,103,678 Rv3663c Rv3664c: Rv3664c - Probable dipeptide-transport integral membrane protein ABC transporter DppC, at 4,103,675 to 4,104,475 Rv3664c Rv3665c: Rv3665c - Probable dipeptide-transport integral membrane protein ABC transporter DppB, at 4,104,531 to 4,105,457 Rv3665c Position (kb) 4102 4103 4104Strain fitness (log2 ratio) -1 0 1at 4101.041 kb on + strandat 4101.041 kb on + strandat 4101.042 kb on - strandat 4101.042 kb on - strandat 4101.042 kb on - strandat 4101.263 kb on - strandat 4102.288 kb on - strand, within Rv3663cat 4102.523 kb on - strand, within Rv3663cat 4103.055 kb on + strand, within Rv3663cat 4103.395 kb on + strand, within Rv3663cat 4104.213 kb on + strand, within Rv3664cat 4104.303 kb on + strand, within Rv3664cat 4104.397 kb on - strandat 4104.482 kb on - strandat 4104.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine 10 mM (N)
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4,101,041 + -0.9
4,101,041 + -0.1
4,101,042 - -0.1
4,101,042 - -0.8
4,101,042 - -0.5
4,101,263 - +0.4
4,102,288 - Rv3663c 0.16 +0.3
4,102,523 - Rv3663c 0.30 +0.6
4,103,055 + Rv3663c 0.62 -1.0
4,103,395 + Rv3663c 0.83 -0.4
4,104,213 + Rv3664c 0.67 +0.2
4,104,303 + Rv3664c 0.78 +0.6
4,104,397 - -1.4
4,104,482 - -0.5
4,104,482 - -1.1

Or see this region's nucleotide sequence