Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2515c

Experiment: L-Aspartic Acid 10 mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2513 and Rv2514c are separated by 293 nucleotidesRv2514c and Rv2515c are separated by 5 nucleotidesRv2515c and Rv2516c are separated by 118 nucleotidesRv2516c and Rv2517c overlap by 4 nucleotides Rv2513: Rv2513 - Hypothetical protein, at 2,830,161 to 2,830,583 Rv2513 Rv2514c: Rv2514c - Conserved hypothetical protein, at 2,830,877 to 2,831,338 Rv2514c Rv2515c: Rv2515c - Conserved hypothetical protein, at 2,831,344 to 2,832,591 Rv2515c Rv2516c: Rv2516c - Hypothetical protein, at 2,832,710 to 2,833,513 Rv2516c Rv2517c: Rv2517c - Unknown protein, at 2,833,510 to 2,833,761 Rv2517c Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -1 0 1 2 3 4at 2830.352 kb on + strand, within Rv2513at 2830.582 kb on - strandat 2830.615 kb on - strandat 2830.809 kb on - strandat 2831.474 kb on + strand, within Rv2515cat 2831.685 kb on - strand, within Rv2515cat 2831.685 kb on - strand, within Rv2515cat 2831.958 kb on + strand, within Rv2515cat 2831.958 kb on + strand, within Rv2515cat 2831.959 kb on - strand, within Rv2515cat 2832.056 kb on + strand, within Rv2515cat 2832.056 kb on + strand, within Rv2515cat 2832.056 kb on + strand, within Rv2515cat 2832.209 kb on - strand, within Rv2515cat 2832.307 kb on + strand, within Rv2515cat 2832.366 kb on - strand, within Rv2515cat 2832.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid 10 mM (N)
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2,830,352 + Rv2513 0.45 -0.1
2,830,582 - +4.4
2,830,615 - +0.1
2,830,809 - +0.1
2,831,474 + Rv2515c 0.10 +0.5
2,831,685 - Rv2515c 0.27 -0.1
2,831,685 - Rv2515c 0.27 +0.2
2,831,958 + Rv2515c 0.49 +0.6
2,831,958 + Rv2515c 0.49 +0.5
2,831,959 - Rv2515c 0.49 +2.1
2,832,056 + Rv2515c 0.57 -1.3
2,832,056 + Rv2515c 0.57 -0.1
2,832,056 + Rv2515c 0.57 -0.2
2,832,209 - Rv2515c 0.69 -0.0
2,832,307 + Rv2515c 0.77 +0.1
2,832,366 - Rv2515c 0.82 -0.8
2,832,705 - +0.8

Or see this region's nucleotide sequence