Experiment: L-Aspartic Acid 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0248c and Rv0249c are separated by 30 nucleotides Rv0249c and Rv0250c are separated by 79 nucleotides Rv0250c and Rv0251c are separated by 144 nucleotides Rv0251c and Rv0252 are separated by 213 nucleotides
Rv0248c: Rv0248c - Probable succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase), at 298,863 to 300,803
Rv0248c
Rv0249c: Rv0249c - Probable succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase), at 300,834 to 301,655
Rv0249c
Rv0250c: Rv0250c - Conserved protein, at 301,735 to 302,028
Rv0250c
Rv0251c: Rv0251c - Heat shock protein Hsp (heat-stress-induced ribosome-binding protein A), at 302,173 to 302,652
Rv0251c
Rv0252: Rv0252 - Probable nitrite reductase [NAD(P)H] large subunit [FAD flavoprotein] NirB, at 302,866 to 305,427
Rv0252
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 300.804 kb on - strand at 300.886 kb on + strand at 301.052 kb on - strand, within Rv0249c at 301.186 kb on + strand, within Rv0249c at 301.234 kb on + strand, within Rv0249c at 301.291 kb on + strand, within Rv0249c at 301.347 kb on + strand, within Rv0249c at 301.444 kb on + strand, within Rv0249c at 301.460 kb on - strand, within Rv0249c at 301.513 kb on + strand, within Rv0249c at 301.513 kb on + strand, within Rv0249c at 301.658 kb on - strand at 301.679 kb on + strand at 301.680 kb on - strand at 301.694 kb on + strand at 301.694 kb on + strand at 301.794 kb on - strand, within Rv0250c at 301.855 kb on + strand, within Rv0250c at 301.856 kb on - strand, within Rv0250c at 301.859 kb on + strand, within Rv0250c at 302.054 kb on + strand at 302.066 kb on + strand at 302.080 kb on + strand at 302.080 kb on + strand at 302.080 kb on + strand at 302.080 kb on + strand at 302.081 kb on - strand at 302.081 kb on - strand at 302.081 kb on - strand at 302.081 kb on - strand at 302.085 kb on - strand at 302.085 kb on - strand at 302.085 kb on - strand at 302.174 kb on + strand at 302.174 kb on + strand at 302.175 kb on - strand at 302.223 kb on - strand, within Rv0251c at 302.261 kb on + strand, within Rv0251c at 302.261 kb on + strand, within Rv0251c at 302.261 kb on + strand, within Rv0251c at 302.710 kb on + strand at 302.710 kb on + strand at 302.710 kb on + strand at 302.712 kb on + strand at 302.713 kb on - strand at 302.811 kb on + strand at 302.812 kb on - strand at 302.812 kb on - strand at 302.812 kb on - strand at 302.812 kb on - strand at 302.854 kb on + strand at 302.855 kb on - strand at 302.871 kb on + strand at 302.872 kb on - strand at 302.872 kb on - strand at 303.025 kb on + strand at 303.025 kb on + strand at 303.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid 10 mM (N) remove 300,804 - -0.7 300,886 + +0.5 301,052 - Rv0249c 0.27 -1.4 301,186 + Rv0249c 0.43 -0.7 301,234 + Rv0249c 0.49 +2.8 301,291 + Rv0249c 0.56 -1.0 301,347 + Rv0249c 0.62 -1.1 301,444 + Rv0249c 0.74 -1.0 301,460 - Rv0249c 0.76 -1.4 301,513 + Rv0249c 0.83 -1.5 301,513 + Rv0249c 0.83 -2.1 301,658 - -1.5 301,679 + -1.1 301,680 - -0.2 301,694 + -0.9 301,694 + +1.8 301,794 - Rv0250c 0.20 -0.2 301,855 + Rv0250c 0.41 -0.6 301,856 - Rv0250c 0.41 -0.0 301,859 + Rv0250c 0.42 +0.0 302,054 + -0.1 302,066 + -0.1 302,080 + +0.8 302,080 + +0.3 302,080 + -1.1 302,080 + -0.4 302,081 - -1.4 302,081 - +1.2 302,081 - +1.8 302,081 - +0.3 302,085 - +0.3 302,085 - +0.1 302,085 - -0.3 302,174 + -0.6 302,174 + -0.2 302,175 - +1.0 302,223 - Rv0251c 0.10 -0.2 302,261 + Rv0251c 0.18 +0.7 302,261 + Rv0251c 0.18 +0.0 302,261 + Rv0251c 0.18 -0.2 302,710 + -0.6 302,710 + -0.1 302,710 + -0.9 302,712 + +0.6 302,713 - -0.1 302,811 + +0.6 302,812 - -0.0 302,812 - +0.2 302,812 - -0.4 302,812 - -0.1 302,854 + -0.0 302,855 - -0.1 302,871 + -1.6 302,872 - -0.4 302,872 - -0.5 303,025 + +0.5 303,025 + -0.6 303,026 - +0.4
Or see this region's nucleotide sequence