Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2937

Experiment: L-Asparagine 10 mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2936 and Rv2937 overlap by 4 nucleotidesRv2937 and Rv2938 overlap by 4 nucleotidesRv2938 and Rv2939 are separated by 46 nucleotides Rv2936: Rv2936 - Daunorubicin-dim-transport ATP-binding protein ABC transporter DrrA, at 3,272,214 to 3,273,209 Rv2936 Rv2937: Rv2937 - Daunorubicin-dim-transport integral membrane protein ABC transporter DrrB, at 3,273,206 to 3,274,075 Rv2937 Rv2938: Rv2938 - Probable daunorubicin-dim-transport integral membrane protein ABC transporter DrrC, at 3,274,072 to 3,274,902 Rv2938 Rv2939: Rv2939 - Possible conserved polyketide synthase associated protein PapA5, at 3,274,949 to 3,276,217 Rv2939 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -1 0 1 2 3at 3272.263 kb on - strandat 3272.452 kb on + strand, within Rv2936at 3272.453 kb on - strand, within Rv2936at 3272.605 kb on + strand, within Rv2936at 3272.606 kb on - strand, within Rv2936at 3272.606 kb on - strand, within Rv2936at 3272.606 kb on - strand, within Rv2936at 3272.634 kb on + strand, within Rv2936at 3272.634 kb on + strand, within Rv2936at 3272.635 kb on - strand, within Rv2936at 3272.660 kb on - strand, within Rv2936at 3272.660 kb on - strand, within Rv2936at 3272.704 kb on + strand, within Rv2936at 3272.704 kb on + strand, within Rv2936at 3272.705 kb on - strand, within Rv2936at 3272.747 kb on + strand, within Rv2936at 3272.748 kb on - strand, within Rv2936at 3272.808 kb on + strand, within Rv2936at 3272.809 kb on - strand, within Rv2936at 3272.864 kb on - strand, within Rv2936at 3272.958 kb on - strand, within Rv2936at 3273.029 kb on + strand, within Rv2936at 3273.029 kb on + strand, within Rv2936at 3273.052 kb on + strand, within Rv2936at 3273.052 kb on + strand, within Rv2936at 3273.052 kb on + strand, within Rv2936at 3273.052 kb on + strand, within Rv2936at 3273.052 kb on + strand, within Rv2936at 3273.052 kb on + strand, within Rv2936at 3273.052 kb on + strand, within Rv2936at 3273.053 kb on - strand, within Rv2936at 3273.053 kb on - strand, within Rv2936at 3273.053 kb on - strand, within Rv2936at 3273.053 kb on - strand, within Rv2936at 3273.056 kb on + strand, within Rv2936at 3273.056 kb on + strand, within Rv2936at 3273.056 kb on + strand, within Rv2936at 3273.056 kb on + strand, within Rv2936at 3273.056 kb on + strand, within Rv2936at 3273.057 kb on - strand, within Rv2936at 3273.057 kb on - strand, within Rv2936at 3273.057 kb on - strand, within Rv2936at 3273.057 kb on - strand, within Rv2936at 3273.103 kb on + strand, within Rv2936at 3273.103 kb on + strand, within Rv2936at 3273.110 kb on + strandat 3273.143 kb on - strandat 3273.222 kb on + strandat 3273.223 kb on - strandat 3273.223 kb on - strandat 3273.223 kb on - strandat 3273.351 kb on + strand, within Rv2937at 3273.351 kb on + strand, within Rv2937at 3273.351 kb on + strand, within Rv2937at 3273.351 kb on + strand, within Rv2937at 3273.352 kb on - strand, within Rv2937at 3273.352 kb on - strand, within Rv2937at 3273.395 kb on + strand, within Rv2937at 3273.395 kb on + strand, within Rv2937at 3273.395 kb on + strand, within Rv2937at 3273.396 kb on - strand, within Rv2937at 3273.396 kb on - strand, within Rv2937at 3273.396 kb on - strand, within Rv2937at 3273.396 kb on - strand, within Rv2937at 3273.396 kb on - strand, within Rv2937at 3273.398 kb on - strand, within Rv2937at 3273.412 kb on - strand, within Rv2937at 3273.462 kb on + strand, within Rv2937at 3273.470 kb on + strand, within Rv2937at 3273.470 kb on + strand, within Rv2937at 3273.470 kb on + strand, within Rv2937at 3273.471 kb on - strand, within Rv2937at 3273.471 kb on - strand, within Rv2937at 3273.471 kb on - strand, within Rv2937at 3273.471 kb on - strand, within Rv2937at 3273.471 kb on - strand, within Rv2937at 3273.661 kb on - strand, within Rv2937at 3273.672 kb on - strand, within Rv2937at 3273.707 kb on + strand, within Rv2937at 3273.955 kb on + strand, within Rv2937at 3273.955 kb on + strand, within Rv2937at 3273.956 kb on - strand, within Rv2937at 3274.184 kb on + strand, within Rv2938at 3274.185 kb on - strand, within Rv2938at 3274.204 kb on + strand, within Rv2938at 3274.205 kb on - strand, within Rv2938at 3274.206 kb on + strand, within Rv2938at 3274.206 kb on + strand, within Rv2938at 3274.207 kb on - strand, within Rv2938at 3274.269 kb on - strand, within Rv2938at 3274.269 kb on - strand, within Rv2938at 3274.269 kb on - strand, within Rv2938at 3274.272 kb on + strand, within Rv2938at 3274.277 kb on + strand, within Rv2938at 3274.277 kb on + strand, within Rv2938at 3274.277 kb on + strand, within Rv2938at 3274.277 kb on + strand, within Rv2938at 3274.277 kb on + strand, within Rv2938at 3274.278 kb on - strand, within Rv2938at 3274.278 kb on - strand, within Rv2938at 3274.282 kb on + strand, within Rv2938at 3274.282 kb on + strand, within Rv2938at 3274.283 kb on - strand, within Rv2938at 3274.283 kb on - strand, within Rv2938at 3274.283 kb on - strand, within Rv2938at 3274.309 kb on + strand, within Rv2938at 3274.310 kb on - strand, within Rv2938at 3274.502 kb on + strand, within Rv2938at 3274.502 kb on + strand, within Rv2938at 3274.502 kb on + strand, within Rv2938at 3274.502 kb on + strand, within Rv2938at 3274.503 kb on - strand, within Rv2938at 3274.503 kb on - strand, within Rv2938at 3274.507 kb on - strand, within Rv2938at 3274.517 kb on + strand, within Rv2938at 3274.567 kb on - strand, within Rv2938at 3274.567 kb on - strand, within Rv2938at 3274.611 kb on + strand, within Rv2938at 3274.611 kb on + strand, within Rv2938at 3274.759 kb on + strand, within Rv2938at 3274.759 kb on + strand, within Rv2938at 3274.760 kb on - strand, within Rv2938at 3274.853 kb on + strandat 3274.854 kb on - strandat 3275.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine 10 mM (N)
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3,272,263 - -0.7
3,272,452 + Rv2936 0.24 -1.1
3,272,453 - Rv2936 0.24 -0.4
3,272,605 + Rv2936 0.39 -0.1
3,272,606 - Rv2936 0.39 +0.6
3,272,606 - Rv2936 0.39 +0.4
3,272,606 - Rv2936 0.39 +0.1
3,272,634 + Rv2936 0.42 -0.0
3,272,634 + Rv2936 0.42 -1.2
3,272,635 - Rv2936 0.42 +0.2
3,272,660 - Rv2936 0.45 +0.4
3,272,660 - Rv2936 0.45 +3.6
3,272,704 + Rv2936 0.49 +0.8
3,272,704 + Rv2936 0.49 -1.2
3,272,705 - Rv2936 0.49 -0.2
3,272,747 + Rv2936 0.54 -0.5
3,272,748 - Rv2936 0.54 -0.1
3,272,808 + Rv2936 0.60 -0.2
3,272,809 - Rv2936 0.60 +0.3
3,272,864 - Rv2936 0.65 -0.2
3,272,958 - Rv2936 0.75 -0.2
3,273,029 + Rv2936 0.82 +0.5
3,273,029 + Rv2936 0.82 +0.0
3,273,052 + Rv2936 0.84 -0.3
3,273,052 + Rv2936 0.84 -0.9
3,273,052 + Rv2936 0.84 -0.4
3,273,052 + Rv2936 0.84 +0.9
3,273,052 + Rv2936 0.84 -0.4
3,273,052 + Rv2936 0.84 -0.3
3,273,052 + Rv2936 0.84 -1.2
3,273,053 - Rv2936 0.84 -0.2
3,273,053 - Rv2936 0.84 +0.2
3,273,053 - Rv2936 0.84 +0.4
3,273,053 - Rv2936 0.84 -0.4
3,273,056 + Rv2936 0.85 -0.4
3,273,056 + Rv2936 0.85 -0.2
3,273,056 + Rv2936 0.85 -0.0
3,273,056 + Rv2936 0.85 -0.3
3,273,056 + Rv2936 0.85 -0.5
3,273,057 - Rv2936 0.85 -0.0
3,273,057 - Rv2936 0.85 +0.1
3,273,057 - Rv2936 0.85 -0.3
3,273,057 - Rv2936 0.85 -0.2
3,273,103 + Rv2936 0.89 -0.5
3,273,103 + Rv2936 0.89 -0.7
3,273,110 + -1.0
3,273,143 - -0.1
3,273,222 + -0.5
3,273,223 - +1.0
3,273,223 - -0.3
3,273,223 - +0.0
3,273,351 + Rv2937 0.17 -0.7
3,273,351 + Rv2937 0.17 -0.2
3,273,351 + Rv2937 0.17 -0.2
3,273,351 + Rv2937 0.17 -0.8
3,273,352 - Rv2937 0.17 -0.4
3,273,352 - Rv2937 0.17 +0.1
3,273,395 + Rv2937 0.22 -0.9
3,273,395 + Rv2937 0.22 +0.3
3,273,395 + Rv2937 0.22 -0.3
3,273,396 - Rv2937 0.22 +0.3
3,273,396 - Rv2937 0.22 -0.3
3,273,396 - Rv2937 0.22 +0.0
3,273,396 - Rv2937 0.22 +0.3
3,273,396 - Rv2937 0.22 +2.0
3,273,398 - Rv2937 0.22 +0.3
3,273,412 - Rv2937 0.24 -0.2
3,273,462 + Rv2937 0.29 -0.6
3,273,470 + Rv2937 0.30 -1.1
3,273,470 + Rv2937 0.30 -1.1
3,273,470 + Rv2937 0.30 -0.4
3,273,471 - Rv2937 0.30 +0.3
3,273,471 - Rv2937 0.30 +0.1
3,273,471 - Rv2937 0.30 -0.3
3,273,471 - Rv2937 0.30 -0.0
3,273,471 - Rv2937 0.30 +0.1
3,273,661 - Rv2937 0.52 -1.5
3,273,672 - Rv2937 0.54 -0.5
3,273,707 + Rv2937 0.58 -0.7
3,273,955 + Rv2937 0.86 -0.8
3,273,955 + Rv2937 0.86 -0.4
3,273,956 - Rv2937 0.86 -0.8
3,274,184 + Rv2938 0.13 -0.7
3,274,185 - Rv2938 0.14 +1.6
3,274,204 + Rv2938 0.16 -0.5
3,274,205 - Rv2938 0.16 -0.2
3,274,206 + Rv2938 0.16 -0.4
3,274,206 + Rv2938 0.16 -0.6
3,274,207 - Rv2938 0.16 +0.4
3,274,269 - Rv2938 0.24 -0.3
3,274,269 - Rv2938 0.24 +0.1
3,274,269 - Rv2938 0.24 -0.1
3,274,272 + Rv2938 0.24 -0.2
3,274,277 + Rv2938 0.25 -0.3
3,274,277 + Rv2938 0.25 -0.4
3,274,277 + Rv2938 0.25 -1.1
3,274,277 + Rv2938 0.25 -0.4
3,274,277 + Rv2938 0.25 -0.5
3,274,278 - Rv2938 0.25 -0.3
3,274,278 - Rv2938 0.25 +0.2
3,274,282 + Rv2938 0.25 -0.4
3,274,282 + Rv2938 0.25 +0.4
3,274,283 - Rv2938 0.25 -0.0
3,274,283 - Rv2938 0.25 -0.2
3,274,283 - Rv2938 0.25 -0.4
3,274,309 + Rv2938 0.29 -0.7
3,274,310 - Rv2938 0.29 -0.1
3,274,502 + Rv2938 0.52 -0.2
3,274,502 + Rv2938 0.52 +1.6
3,274,502 + Rv2938 0.52 -0.7
3,274,502 + Rv2938 0.52 +0.3
3,274,503 - Rv2938 0.52 -0.4
3,274,503 - Rv2938 0.52 -1.0
3,274,507 - Rv2938 0.52 -0.3
3,274,517 + Rv2938 0.54 -0.9
3,274,567 - Rv2938 0.60 -0.1
3,274,567 - Rv2938 0.60 -0.1
3,274,611 + Rv2938 0.65 -0.3
3,274,611 + Rv2938 0.65 +1.0
3,274,759 + Rv2938 0.83 +0.3
3,274,759 + Rv2938 0.83 -0.4
3,274,760 - Rv2938 0.83 -0.6
3,274,853 + +1.1
3,274,854 - +0.7
3,275,018 - +2.2

Or see this region's nucleotide sequence