Experiment: L-Asparagine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0294 and Rv0295c overlap by 12 nucleotides Rv0295c and Rv0296c are separated by 9 nucleotides Rv0296c and Rv0297 are separated by 178 nucleotides
Rv0294: Rv0294 - Probable trans-aconitate methyltransferase Tam, at 358,171 to 358,956
Rv0294
Rv0295c: Rv0295c - Conserved protein, at 358,945 to 359,748
Rv0295c
Rv0296c: Rv0296c - Probable sulfatase, at 359,758 to 361,155
Rv0296c
Rv0297: Rv0297 - PE-PGRS family protein PE_PGRS5, at 361,334 to 363,109
Rv0297
Position (kb) 359
360
361
362 Strain fitness (log2 ratio) -1
0
1
2
3 at 358.884 kb on + strand at 358.885 kb on - strand at 358.955 kb on - strand at 359.108 kb on - strand, within Rv0295c at 359.533 kb on - strand, within Rv0295c at 359.533 kb on - strand, within Rv0295c at 359.623 kb on - strand, within Rv0295c at 359.631 kb on - strand, within Rv0295c at 359.726 kb on + strand at 359.726 kb on + strand at 359.726 kb on + strand at 359.759 kb on + strand at 359.838 kb on - strand at 360.014 kb on - strand, within Rv0296c at 360.014 kb on - strand, within Rv0296c at 360.090 kb on + strand, within Rv0296c at 360.125 kb on + strand, within Rv0296c at 360.138 kb on - strand, within Rv0296c at 360.138 kb on - strand, within Rv0296c at 360.143 kb on + strand, within Rv0296c at 360.144 kb on - strand, within Rv0296c at 360.144 kb on - strand, within Rv0296c at 360.203 kb on + strand, within Rv0296c at 360.203 kb on + strand, within Rv0296c at 360.203 kb on + strand, within Rv0296c at 360.203 kb on + strand, within Rv0296c at 360.203 kb on + strand, within Rv0296c at 360.203 kb on + strand, within Rv0296c at 360.204 kb on - strand, within Rv0296c at 360.205 kb on + strand, within Rv0296c at 360.205 kb on + strand, within Rv0296c at 360.205 kb on + strand, within Rv0296c at 360.205 kb on + strand, within Rv0296c at 360.205 kb on + strand, within Rv0296c at 360.205 kb on + strand, within Rv0296c at 360.205 kb on + strand, within Rv0296c at 360.206 kb on - strand, within Rv0296c at 360.206 kb on - strand, within Rv0296c at 360.206 kb on - strand, within Rv0296c at 360.350 kb on + strand, within Rv0296c at 360.419 kb on + strand, within Rv0296c at 360.419 kb on + strand, within Rv0296c at 360.420 kb on - strand, within Rv0296c at 360.420 kb on - strand, within Rv0296c at 360.420 kb on - strand, within Rv0296c at 360.558 kb on - strand, within Rv0296c at 360.558 kb on - strand, within Rv0296c at 360.602 kb on + strand, within Rv0296c at 360.768 kb on - strand, within Rv0296c at 360.768 kb on - strand, within Rv0296c at 360.812 kb on + strand, within Rv0296c at 361.055 kb on + strand at 361.056 kb on - strand at 361.085 kb on + strand at 361.204 kb on - strand at 361.204 kb on - strand at 361.210 kb on + strand at 361.210 kb on + strand at 361.211 kb on - strand at 361.212 kb on + strand at 361.251 kb on + strand at 361.251 kb on + strand at 361.282 kb on + strand at 361.478 kb on - strand at 361.517 kb on + strand, within Rv0297 at 361.517 kb on + strand, within Rv0297 at 361.518 kb on - strand, within Rv0297 at 361.592 kb on + strand, within Rv0297 at 361.592 kb on + strand, within Rv0297
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine 10 mM (N) remove 358,884 + +0.1 358,885 - -0.2 358,955 - +0.7 359,108 - Rv0295c 0.20 +1.1 359,533 - Rv0295c 0.73 +2.8 359,533 - Rv0295c 0.73 +1.4 359,623 - Rv0295c 0.84 +1.1 359,631 - Rv0295c 0.85 +2.7 359,726 + +2.0 359,726 + +1.3 359,726 + +2.1 359,759 + -0.4 359,838 - -0.3 360,014 - Rv0296c 0.18 -0.3 360,014 - Rv0296c 0.18 -0.8 360,090 + Rv0296c 0.24 -0.2 360,125 + Rv0296c 0.26 -1.1 360,138 - Rv0296c 0.27 -0.3 360,138 - Rv0296c 0.27 -0.5 360,143 + Rv0296c 0.28 -0.7 360,144 - Rv0296c 0.28 -0.4 360,144 - Rv0296c 0.28 +0.6 360,203 + Rv0296c 0.32 -0.4 360,203 + Rv0296c 0.32 -0.5 360,203 + Rv0296c 0.32 -0.1 360,203 + Rv0296c 0.32 -1.1 360,203 + Rv0296c 0.32 -0.4 360,203 + Rv0296c 0.32 -1.4 360,204 - Rv0296c 0.32 +0.2 360,205 + Rv0296c 0.32 -0.3 360,205 + Rv0296c 0.32 -0.3 360,205 + Rv0296c 0.32 -0.8 360,205 + Rv0296c 0.32 -0.6 360,205 + Rv0296c 0.32 -0.5 360,205 + Rv0296c 0.32 +1.7 360,205 + Rv0296c 0.32 -0.0 360,206 - Rv0296c 0.32 -0.4 360,206 - Rv0296c 0.32 -0.7 360,206 - Rv0296c 0.32 -1.0 360,350 + Rv0296c 0.42 -0.4 360,419 + Rv0296c 0.47 -1.1 360,419 + Rv0296c 0.47 +0.2 360,420 - Rv0296c 0.47 -0.2 360,420 - Rv0296c 0.47 +0.5 360,420 - Rv0296c 0.47 +0.5 360,558 - Rv0296c 0.57 -0.4 360,558 - Rv0296c 0.57 -0.5 360,602 + Rv0296c 0.60 +1.0 360,768 - Rv0296c 0.72 -0.3 360,768 - Rv0296c 0.72 -1.1 360,812 + Rv0296c 0.75 -0.7 361,055 + -0.5 361,056 - -1.0 361,085 + -0.5 361,204 - +1.5 361,204 - -0.6 361,210 + +0.9 361,210 + -0.3 361,211 - +0.2 361,212 + -0.3 361,251 + -0.2 361,251 + +0.1 361,282 + +0.2 361,478 - -0.4 361,517 + Rv0297 0.10 -0.3 361,517 + Rv0297 0.10 +0.1 361,518 - Rv0297 0.10 -0.3 361,592 + Rv0297 0.15 +0.1 361,592 + Rv0297 0.15 -0.2
Or see this region's nucleotide sequence