Experiment: L-Asparagine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0929 and Rv0930 overlap by 4 nucleotides Rv0930 and Rv0931c overlap by 6 nucleotides Rv0931c and Rv0932c are separated by 21 nucleotides
Rv0929: Rv0929 - Phosphate-transport integral membrane ABC transporter PstC2, at 1,036,028 to 1,037,002
Rv0929
Rv0930: Rv0930 - Probable phosphate-transport integral membrane ABC transporter PstA1, at 1,036,999 to 1,037,925
Rv0930
Rv0931c: Rv0931c - Transmembrane serine/threonine-protein kinase D PknD (protein kinase D) (STPK D), at 1,037,920 to 1,039,914
Rv0931c
Rv0932c: Rv0932c - Periplasmic phosphate-binding lipoprotein PstS2 (PBP-2) (PstS2), at 1,039,936 to 1,041,048
Rv0932c
Position (kb) 1037
1038
1039
1040 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1037.065 kb on - strand at 1037.254 kb on + strand, within Rv0930 at 1037.255 kb on - strand, within Rv0930 at 1037.266 kb on + strand, within Rv0930 at 1037.335 kb on + strand, within Rv0930 at 1037.335 kb on + strand, within Rv0930 at 1037.336 kb on - strand, within Rv0930 at 1037.377 kb on - strand, within Rv0930 at 1037.412 kb on + strand, within Rv0930 at 1037.427 kb on - strand, within Rv0930 at 1037.779 kb on + strand, within Rv0930 at 1037.780 kb on - strand, within Rv0930 at 1037.966 kb on + strand at 1037.966 kb on + strand at 1037.966 kb on + strand at 1038.092 kb on + strand at 1038.092 kb on + strand at 1038.093 kb on - strand at 1038.219 kb on - strand, within Rv0931c at 1038.344 kb on + strand, within Rv0931c at 1038.344 kb on + strand, within Rv0931c at 1038.344 kb on + strand, within Rv0931c at 1038.345 kb on - strand, within Rv0931c at 1038.345 kb on - strand, within Rv0931c at 1038.345 kb on - strand, within Rv0931c at 1038.384 kb on - strand, within Rv0931c at 1038.384 kb on - strand, within Rv0931c at 1038.467 kb on + strand, within Rv0931c at 1038.467 kb on + strand, within Rv0931c at 1038.467 kb on + strand, within Rv0931c at 1038.468 kb on - strand, within Rv0931c at 1038.468 kb on - strand, within Rv0931c at 1038.468 kb on - strand, within Rv0931c at 1038.468 kb on - strand, within Rv0931c at 1038.468 kb on - strand, within Rv0931c at 1038.469 kb on + strand, within Rv0931c at 1038.510 kb on - strand, within Rv0931c at 1038.576 kb on - strand, within Rv0931c at 1038.576 kb on - strand, within Rv0931c at 1038.576 kb on - strand, within Rv0931c at 1038.597 kb on - strand, within Rv0931c at 1038.597 kb on - strand, within Rv0931c at 1038.710 kb on - strand, within Rv0931c at 1039.205 kb on - strand, within Rv0931c at 1039.234 kb on + strand, within Rv0931c at 1039.235 kb on - strand, within Rv0931c at 1039.235 kb on - strand, within Rv0931c at 1039.235 kb on - strand, within Rv0931c at 1039.322 kb on + strand, within Rv0931c at 1039.322 kb on + strand, within Rv0931c at 1039.322 kb on + strand, within Rv0931c at 1039.322 kb on + strand, within Rv0931c at 1039.323 kb on - strand, within Rv0931c at 1039.323 kb on - strand, within Rv0931c at 1039.323 kb on - strand, within Rv0931c at 1039.323 kb on - strand, within Rv0931c at 1039.326 kb on + strand, within Rv0931c at 1039.326 kb on + strand, within Rv0931c at 1039.326 kb on + strand, within Rv0931c at 1039.326 kb on + strand, within Rv0931c at 1039.327 kb on - strand, within Rv0931c at 1039.327 kb on - strand, within Rv0931c at 1039.327 kb on - strand, within Rv0931c at 1039.327 kb on - strand, within Rv0931c at 1039.327 kb on - strand, within Rv0931c at 1039.337 kb on + strand, within Rv0931c at 1039.337 kb on + strand, within Rv0931c at 1039.376 kb on + strand, within Rv0931c at 1039.376 kb on + strand, within Rv0931c at 1039.376 kb on + strand, within Rv0931c at 1039.376 kb on + strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.382 kb on + strand, within Rv0931c at 1039.382 kb on + strand, within Rv0931c at 1039.382 kb on + strand, within Rv0931c at 1039.383 kb on - strand, within Rv0931c at 1039.383 kb on - strand, within Rv0931c at 1039.457 kb on + strand, within Rv0931c at 1039.457 kb on + strand, within Rv0931c at 1039.595 kb on + strand, within Rv0931c at 1039.595 kb on + strand, within Rv0931c at 1039.596 kb on - strand, within Rv0931c at 1039.596 kb on - strand, within Rv0931c at 1039.596 kb on - strand, within Rv0931c at 1039.673 kb on + strand, within Rv0931c at 1039.673 kb on + strand, within Rv0931c at 1039.674 kb on - strand, within Rv0931c at 1039.767 kb on - strand at 1039.826 kb on + strand at 1039.865 kb on - strand at 1039.892 kb on - strand at 1040.046 kb on + strand at 1040.047 kb on - strand at 1040.064 kb on + strand, within Rv0932c at 1040.085 kb on - strand, within Rv0932c at 1040.105 kb on + strand, within Rv0932c at 1040.105 kb on + strand, within Rv0932c at 1040.105 kb on + strand, within Rv0932c at 1040.106 kb on - strand, within Rv0932c at 1040.150 kb on + strand, within Rv0932c at 1040.151 kb on - strand, within Rv0932c at 1040.318 kb on + strand, within Rv0932c at 1040.318 kb on + strand, within Rv0932c at 1040.319 kb on - strand, within Rv0932c at 1040.319 kb on - strand, within Rv0932c at 1040.319 kb on - strand, within Rv0932c at 1040.451 kb on - strand, within Rv0932c at 1040.497 kb on - strand, within Rv0932c at 1040.502 kb on + strand, within Rv0932c at 1040.634 kb on + strand, within Rv0932c at 1040.634 kb on + strand, within Rv0932c at 1040.635 kb on - strand, within Rv0932c at 1040.639 kb on + strand, within Rv0932c at 1040.639 kb on + strand, within Rv0932c at 1040.640 kb on - strand, within Rv0932c at 1040.640 kb on - strand, within Rv0932c at 1040.852 kb on + strand, within Rv0932c at 1040.852 kb on + strand, within Rv0932c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine 10 mM (N) remove 1,037,065 - -1.2 1,037,254 + Rv0930 0.28 -2.1 1,037,255 - Rv0930 0.28 -5.0 1,037,266 + Rv0930 0.29 -2.5 1,037,335 + Rv0930 0.36 -2.9 1,037,335 + Rv0930 0.36 -3.1 1,037,336 - Rv0930 0.36 -4.5 1,037,377 - Rv0930 0.41 -3.8 1,037,412 + Rv0930 0.45 -0.6 1,037,427 - Rv0930 0.46 -2.2 1,037,779 + Rv0930 0.84 -2.2 1,037,780 - Rv0930 0.84 -1.8 1,037,966 + +0.2 1,037,966 + -0.1 1,037,966 + -0.8 1,038,092 + -0.5 1,038,092 + -0.1 1,038,093 - -0.0 1,038,219 - Rv0931c 0.15 -0.6 1,038,344 + Rv0931c 0.21 +0.0 1,038,344 + Rv0931c 0.21 +0.0 1,038,344 + Rv0931c 0.21 -0.4 1,038,345 - Rv0931c 0.21 +2.0 1,038,345 - Rv0931c 0.21 +1.1 1,038,345 - Rv0931c 0.21 +0.2 1,038,384 - Rv0931c 0.23 +0.3 1,038,384 - Rv0931c 0.23 +0.0 1,038,467 + Rv0931c 0.27 +0.7 1,038,467 + Rv0931c 0.27 -0.3 1,038,467 + Rv0931c 0.27 -0.1 1,038,468 - Rv0931c 0.27 -0.2 1,038,468 - Rv0931c 0.27 -0.1 1,038,468 - Rv0931c 0.27 -0.3 1,038,468 - Rv0931c 0.27 +0.0 1,038,468 - Rv0931c 0.27 +0.5 1,038,469 + Rv0931c 0.28 -0.3 1,038,510 - Rv0931c 0.30 +0.8 1,038,576 - Rv0931c 0.33 +0.1 1,038,576 - Rv0931c 0.33 -0.4 1,038,576 - Rv0931c 0.33 -0.6 1,038,597 - Rv0931c 0.34 +2.0 1,038,597 - Rv0931c 0.34 -0.1 1,038,710 - Rv0931c 0.40 -0.3 1,039,205 - Rv0931c 0.64 -0.1 1,039,234 + Rv0931c 0.66 -0.2 1,039,235 - Rv0931c 0.66 -0.8 1,039,235 - Rv0931c 0.66 +0.3 1,039,235 - Rv0931c 0.66 -0.4 1,039,322 + Rv0931c 0.70 -0.5 1,039,322 + Rv0931c 0.70 +0.3 1,039,322 + Rv0931c 0.70 +1.0 1,039,322 + Rv0931c 0.70 +0.5 1,039,323 - Rv0931c 0.70 -1.9 1,039,323 - Rv0931c 0.70 -1.0 1,039,323 - Rv0931c 0.70 -0.6 1,039,323 - Rv0931c 0.70 -0.4 1,039,326 + Rv0931c 0.70 +0.5 1,039,326 + Rv0931c 0.70 -0.5 1,039,326 + Rv0931c 0.70 -0.4 1,039,326 + Rv0931c 0.70 -0.0 1,039,327 - Rv0931c 0.71 -0.6 1,039,327 - Rv0931c 0.71 +0.0 1,039,327 - Rv0931c 0.71 -0.2 1,039,327 - Rv0931c 0.71 -0.8 1,039,327 - Rv0931c 0.71 +0.3 1,039,337 + Rv0931c 0.71 +0.3 1,039,337 + Rv0931c 0.71 +0.7 1,039,376 + Rv0931c 0.73 -0.2 1,039,376 + Rv0931c 0.73 -0.1 1,039,376 + Rv0931c 0.73 -0.1 1,039,376 + Rv0931c 0.73 +0.5 1,039,377 - Rv0931c 0.73 +0.2 1,039,377 - Rv0931c 0.73 +0.1 1,039,377 - Rv0931c 0.73 -0.4 1,039,377 - Rv0931c 0.73 -0.0 1,039,377 - Rv0931c 0.73 +0.4 1,039,377 - Rv0931c 0.73 -0.9 1,039,382 + Rv0931c 0.73 +0.3 1,039,382 + Rv0931c 0.73 +0.6 1,039,382 + Rv0931c 0.73 +0.1 1,039,383 - Rv0931c 0.73 -1.0 1,039,383 - Rv0931c 0.73 -0.4 1,039,457 + Rv0931c 0.77 -0.1 1,039,457 + Rv0931c 0.77 -0.2 1,039,595 + Rv0931c 0.84 +0.3 1,039,595 + Rv0931c 0.84 -0.4 1,039,596 - Rv0931c 0.84 -0.9 1,039,596 - Rv0931c 0.84 +0.6 1,039,596 - Rv0931c 0.84 -0.0 1,039,673 + Rv0931c 0.88 +0.3 1,039,673 + Rv0931c 0.88 -0.4 1,039,674 - Rv0931c 0.88 +0.6 1,039,767 - -0.5 1,039,826 + +0.7 1,039,865 - -0.3 1,039,892 - -1.0 1,040,046 + -0.1 1,040,047 - -0.4 1,040,064 + Rv0932c 0.12 +1.4 1,040,085 - Rv0932c 0.13 +0.4 1,040,105 + Rv0932c 0.15 -0.6 1,040,105 + Rv0932c 0.15 -0.3 1,040,105 + Rv0932c 0.15 -0.3 1,040,106 - Rv0932c 0.15 +0.1 1,040,150 + Rv0932c 0.19 +0.7 1,040,151 - Rv0932c 0.19 -0.6 1,040,318 + Rv0932c 0.34 +1.1 1,040,318 + Rv0932c 0.34 -0.1 1,040,319 - Rv0932c 0.34 -0.6 1,040,319 - Rv0932c 0.34 -0.1 1,040,319 - Rv0932c 0.34 +0.3 1,040,451 - Rv0932c 0.46 +0.2 1,040,497 - Rv0932c 0.50 -0.0 1,040,502 + Rv0932c 0.51 +0.4 1,040,634 + Rv0932c 0.63 -0.4 1,040,634 + Rv0932c 0.63 +0.0 1,040,635 - Rv0932c 0.63 -0.2 1,040,639 + Rv0932c 0.63 -0.1 1,040,639 + Rv0932c 0.63 +1.6 1,040,640 - Rv0932c 0.63 -1.2 1,040,640 - Rv0932c 0.63 -0.6 1,040,852 + Rv0932c 0.82 -0.3 1,040,852 + Rv0932c 0.82 +0.4
Or see this region's nucleotide sequence