Experiment: L-Asparagine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0708 and Rv0709 overlap by 1 nucleotides Rv0709 and Rv0710 overlap by 4 nucleotides Rv0710 and Rv0711 are separated by 168 nucleotides Rv0711 and Rv0712 are separated by 47 nucleotides
Rv0708: Rv0708 - 50S ribosomal protein L16 RplP, at 805,110 to 805,526
Rv0708
Rv0709: Rv0709 - 50S ribosomal protein L29 RpmC, at 805,526 to 805,759
Rv0709
Rv0710: Rv0710 - 30S ribosomal protein S17 RpsQ, at 805,756 to 806,166
Rv0710
Rv0711: Rv0711 - Possible arylsulfatase AtsA (aryl-sulfate sulphohydrolase) (arylsulphatase), at 806,335 to 808,698
Rv0711
Rv0712: Rv0712 - Conserved protein, at 808,746 to 809,645
Rv0712
Position (kb) 806
807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2 at 806.165 kb on - strand at 806.274 kb on + strand at 806.292 kb on + strand at 806.293 kb on - strand at 806.308 kb on - strand at 806.383 kb on - strand at 806.630 kb on + strand, within Rv0711 at 806.640 kb on + strand, within Rv0711 at 806.734 kb on + strand, within Rv0711 at 806.734 kb on + strand, within Rv0711 at 806.734 kb on + strand, within Rv0711 at 806.734 kb on + strand, within Rv0711 at 806.734 kb on + strand, within Rv0711 at 806.734 kb on + strand, within Rv0711 at 806.734 kb on + strand, within Rv0711 at 806.735 kb on - strand, within Rv0711 at 806.735 kb on - strand, within Rv0711 at 806.743 kb on + strand, within Rv0711 at 806.743 kb on + strand, within Rv0711 at 806.743 kb on + strand, within Rv0711 at 806.744 kb on - strand, within Rv0711 at 806.788 kb on - strand, within Rv0711 at 806.839 kb on + strand, within Rv0711 at 806.885 kb on + strand, within Rv0711 at 806.885 kb on + strand, within Rv0711 at 806.887 kb on + strand, within Rv0711 at 806.888 kb on - strand, within Rv0711 at 807.019 kb on + strand, within Rv0711 at 807.080 kb on - strand, within Rv0711 at 807.104 kb on - strand, within Rv0711 at 807.104 kb on - strand, within Rv0711 at 807.183 kb on - strand, within Rv0711 at 807.356 kb on - strand, within Rv0711 at 807.472 kb on + strand, within Rv0711 at 807.532 kb on + strand, within Rv0711 at 807.577 kb on + strand, within Rv0711 at 807.577 kb on + strand, within Rv0711 at 807.578 kb on - strand, within Rv0711 at 807.578 kb on - strand, within Rv0711 at 807.596 kb on - strand, within Rv0711 at 807.682 kb on + strand, within Rv0711 at 807.683 kb on - strand, within Rv0711 at 808.054 kb on + strand, within Rv0711 at 808.055 kb on - strand, within Rv0711 at 808.114 kb on + strand, within Rv0711 at 808.138 kb on + strand, within Rv0711 at 808.139 kb on - strand, within Rv0711 at 808.139 kb on - strand, within Rv0711 at 808.144 kb on + strand, within Rv0711 at 808.145 kb on - strand, within Rv0711 at 808.145 kb on - strand, within Rv0711 at 808.145 kb on - strand, within Rv0711 at 808.319 kb on - strand, within Rv0711 at 808.319 kb on - strand, within Rv0711 at 808.325 kb on - strand, within Rv0711 at 808.582 kb on + strand at 808.582 kb on + strand at 809.054 kb on - strand, within Rv0712 at 809.125 kb on + strand, within Rv0712 at 809.154 kb on + strand, within Rv0712 at 809.232 kb on + strand, within Rv0712 at 809.232 kb on + strand, within Rv0712 at 809.233 kb on - strand, within Rv0712 at 809.233 kb on - strand, within Rv0712 at 809.421 kb on + strand, within Rv0712 at 809.421 kb on + strand, within Rv0712 at 809.422 kb on - strand, within Rv0712 at 809.544 kb on + strand, within Rv0712
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine 10 mM (N) remove 806,165 - +0.6 806,274 + -0.5 806,292 + -2.2 806,293 - +2.0 806,308 - +0.7 806,383 - -0.6 806,630 + Rv0711 0.12 -0.2 806,640 + Rv0711 0.13 +0.1 806,734 + Rv0711 0.17 +0.7 806,734 + Rv0711 0.17 +0.1 806,734 + Rv0711 0.17 -1.4 806,734 + Rv0711 0.17 +0.0 806,734 + Rv0711 0.17 -0.6 806,734 + Rv0711 0.17 -0.3 806,734 + Rv0711 0.17 -0.3 806,735 - Rv0711 0.17 -0.4 806,735 - Rv0711 0.17 -0.8 806,743 + Rv0711 0.17 -0.3 806,743 + Rv0711 0.17 -0.4 806,743 + Rv0711 0.17 +0.2 806,744 - Rv0711 0.17 -0.6 806,788 - Rv0711 0.19 +0.8 806,839 + Rv0711 0.21 -0.1 806,885 + Rv0711 0.23 -0.3 806,885 + Rv0711 0.23 -1.1 806,887 + Rv0711 0.23 +1.6 806,888 - Rv0711 0.23 +0.3 807,019 + Rv0711 0.29 +0.0 807,080 - Rv0711 0.32 +1.0 807,104 - Rv0711 0.33 +1.4 807,104 - Rv0711 0.33 +0.1 807,183 - Rv0711 0.36 +1.2 807,356 - Rv0711 0.43 -0.2 807,472 + Rv0711 0.48 -0.2 807,532 + Rv0711 0.51 +0.7 807,577 + Rv0711 0.53 -0.6 807,577 + Rv0711 0.53 -0.6 807,578 - Rv0711 0.53 -0.4 807,578 - Rv0711 0.53 -0.3 807,596 - Rv0711 0.53 -0.5 807,682 + Rv0711 0.57 -0.0 807,683 - Rv0711 0.57 +0.4 808,054 + Rv0711 0.73 +0.3 808,055 - Rv0711 0.73 -0.6 808,114 + Rv0711 0.75 -0.1 808,138 + Rv0711 0.76 -0.9 808,139 - Rv0711 0.76 +0.0 808,139 - Rv0711 0.76 +2.0 808,144 + Rv0711 0.77 +1.2 808,145 - Rv0711 0.77 +0.3 808,145 - Rv0711 0.77 +0.2 808,145 - Rv0711 0.77 +0.3 808,319 - Rv0711 0.84 +0.0 808,319 - Rv0711 0.84 -0.4 808,325 - Rv0711 0.84 +0.8 808,582 + -0.1 808,582 + -0.1 809,054 - Rv0712 0.34 +0.2 809,125 + Rv0712 0.42 -0.5 809,154 + Rv0712 0.45 -1.6 809,232 + Rv0712 0.54 -0.1 809,232 + Rv0712 0.54 -2.1 809,233 - Rv0712 0.54 -1.1 809,233 - Rv0712 0.54 +1.3 809,421 + Rv0712 0.75 -1.2 809,421 + Rv0712 0.75 -0.8 809,422 - Rv0712 0.75 -0.6 809,544 + Rv0712 0.89 -1.3
Or see this region's nucleotide sequence