Experiment: L-Alanine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0567 and Rv0568 are separated by 109 nucleotides Rv0568 and Rv0569 are separated by 134 nucleotides Rv0569 and Rv0570 are separated by 25 nucleotides
Rv0567: Rv0567 - Probable methyltransferase/methylase, at 658,321 to 659,340
Rv0567
Rv0568: Rv0568 - Possible cytochrome P450 135B1 Cyp135B1, at 659,450 to 660,868
Rv0568
Rv0569: Rv0569 - Conserved protein, at 661,003 to 661,269
Rv0569
Rv0570: Rv0570 - Probable ribonucleoside-diphosphate reductase (large subunit) NrdZ (ribonucleotide reductase), at 661,295 to 663,373
Rv0570
Position (kb) 659
660
661 Strain fitness (log2 ratio) -1
0
1
2
3 at 658.469 kb on + strand, within Rv0567 at 658.470 kb on - strand, within Rv0567 at 658.560 kb on + strand, within Rv0567 at 658.560 kb on + strand, within Rv0567 at 658.561 kb on - strand, within Rv0567 at 658.604 kb on - strand, within Rv0567 at 658.604 kb on - strand, within Rv0567 at 658.604 kb on - strand, within Rv0567 at 658.735 kb on + strand, within Rv0567 at 659.211 kb on + strand, within Rv0567 at 659.237 kb on - strand, within Rv0567 at 659.334 kb on + strand at 659.334 kb on + strand at 659.334 kb on + strand at 659.334 kb on + strand at 659.335 kb on - strand at 659.338 kb on + strand at 659.339 kb on - strand at 659.437 kb on + strand at 659.437 kb on + strand at 659.438 kb on - strand at 659.438 kb on - strand at 659.612 kb on + strand, within Rv0568 at 659.612 kb on + strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.858 kb on - strand, within Rv0568 at 659.923 kb on - strand, within Rv0568 at 660.086 kb on + strand, within Rv0568 at 660.086 kb on + strand, within Rv0568 at 660.087 kb on - strand, within Rv0568 at 660.359 kb on + strand, within Rv0568 at 660.360 kb on - strand, within Rv0568 at 660.407 kb on + strand, within Rv0568 at 660.408 kb on - strand, within Rv0568 at 660.518 kb on + strand, within Rv0568 at 660.519 kb on - strand, within Rv0568 at 660.717 kb on + strand, within Rv0568 at 660.718 kb on - strand, within Rv0568 at 661.049 kb on + strand, within Rv0569 at 661.077 kb on + strand, within Rv0569 at 661.078 kb on - strand, within Rv0569 at 661.111 kb on + strand, within Rv0569 at 661.111 kb on + strand, within Rv0569 at 661.112 kb on - strand, within Rv0569 at 661.267 kb on + strand at 661.267 kb on + strand at 661.267 kb on + strand at 661.544 kb on + strand, within Rv0570 at 661.545 kb on - strand, within Rv0570 at 661.614 kb on + strand, within Rv0570 at 661.614 kb on + strand, within Rv0570
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine 10 mM (N) remove 658,469 + Rv0567 0.15 -0.1 658,470 - Rv0567 0.15 -0.2 658,560 + Rv0567 0.23 -0.5 658,560 + Rv0567 0.23 -1.4 658,561 - Rv0567 0.24 +0.4 658,604 - Rv0567 0.28 -0.4 658,604 - Rv0567 0.28 +0.4 658,604 - Rv0567 0.28 -1.4 658,735 + Rv0567 0.41 -0.1 659,211 + Rv0567 0.87 -1.0 659,237 - Rv0567 0.90 +0.0 659,334 + +0.2 659,334 + -0.5 659,334 + +0.3 659,334 + -0.5 659,335 - +0.0 659,338 + +0.2 659,339 - -0.9 659,437 + +0.3 659,437 + -0.1 659,438 - -0.8 659,438 - -0.9 659,612 + Rv0568 0.11 -0.1 659,612 + Rv0568 0.11 -0.7 659,613 - Rv0568 0.11 -0.1 659,613 - Rv0568 0.11 -1.4 659,613 - Rv0568 0.11 +0.1 659,613 - Rv0568 0.11 -0.2 659,613 - Rv0568 0.11 +0.1 659,613 - Rv0568 0.11 -0.3 659,858 - Rv0568 0.29 -0.4 659,923 - Rv0568 0.33 -1.4 660,086 + Rv0568 0.45 -0.3 660,086 + Rv0568 0.45 -0.1 660,087 - Rv0568 0.45 -0.1 660,359 + Rv0568 0.64 -0.1 660,360 - Rv0568 0.64 -0.0 660,407 + Rv0568 0.67 +1.0 660,408 - Rv0568 0.68 -0.3 660,518 + Rv0568 0.75 -0.1 660,519 - Rv0568 0.75 +0.7 660,717 + Rv0568 0.89 +1.8 660,718 - Rv0568 0.89 +0.0 661,049 + Rv0569 0.17 +0.1 661,077 + Rv0569 0.28 +0.6 661,078 - Rv0569 0.28 +1.1 661,111 + Rv0569 0.40 +2.8 661,111 + Rv0569 0.40 +1.0 661,112 - Rv0569 0.41 +0.9 661,267 + -0.3 661,267 + -1.6 661,267 + -1.4 661,544 + Rv0570 0.12 -0.0 661,545 - Rv0570 0.12 +0.0 661,614 + Rv0570 0.15 -0.7 661,614 + Rv0570 0.15 +1.4
Or see this region's nucleotide sequence