Experiment: L-Alanine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0565c and Rv0566c are separated by 77 nucleotides Rv0566c and GFF587 are separated by 69 nucleotides GFF587 and Rv0567 are separated by 131 nucleotides Rv0567 and Rv0568 are separated by 109 nucleotides
Rv0565c: Rv0565c - Probable monooxygenase, at 656,010 to 657,470
Rv0565c
Rv0566c: Rv0566c - Conserved protein, at 657,548 to 658,039
Rv0566c
GFF587 - tRNA-Tyr, at 658,109 to 658,189
GFF587
Rv0567: Rv0567 - Probable methyltransferase/methylase, at 658,321 to 659,340
Rv0567
Rv0568: Rv0568 - Possible cytochrome P450 135B1 Cyp135B1, at 659,450 to 660,868
Rv0568
Position (kb) 658
659
660 Strain fitness (log2 ratio) -1
0
1
2 at 657.362 kb on - strand at 657.362 kb on - strand at 657.362 kb on - strand at 657.555 kb on + strand at 657.556 kb on - strand at 657.733 kb on + strand, within Rv0566c at 657.765 kb on + strand, within Rv0566c at 657.766 kb on - strand, within Rv0566c at 658.205 kb on + strand at 658.375 kb on - strand at 658.375 kb on - strand at 658.380 kb on - strand at 658.380 kb on - strand at 658.380 kb on - strand at 658.380 kb on - strand at 658.469 kb on + strand, within Rv0567 at 658.470 kb on - strand, within Rv0567 at 658.560 kb on + strand, within Rv0567 at 658.560 kb on + strand, within Rv0567 at 658.561 kb on - strand, within Rv0567 at 658.604 kb on - strand, within Rv0567 at 658.604 kb on - strand, within Rv0567 at 658.604 kb on - strand, within Rv0567 at 658.735 kb on + strand, within Rv0567 at 659.211 kb on + strand, within Rv0567 at 659.237 kb on - strand, within Rv0567 at 659.334 kb on + strand at 659.334 kb on + strand at 659.334 kb on + strand at 659.334 kb on + strand at 659.335 kb on - strand at 659.338 kb on + strand at 659.339 kb on - strand at 659.437 kb on + strand at 659.437 kb on + strand at 659.438 kb on - strand at 659.438 kb on - strand at 659.612 kb on + strand, within Rv0568 at 659.612 kb on + strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.613 kb on - strand, within Rv0568 at 659.858 kb on - strand, within Rv0568 at 659.923 kb on - strand, within Rv0568 at 660.086 kb on + strand, within Rv0568 at 660.086 kb on + strand, within Rv0568 at 660.087 kb on - strand, within Rv0568
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine 10 mM (N) remove 657,362 - -0.4 657,362 - -0.7 657,362 - +0.7 657,555 + +0.0 657,556 - +0.1 657,733 + Rv0566c 0.38 -0.1 657,765 + Rv0566c 0.44 +0.5 657,766 - Rv0566c 0.44 -0.3 658,205 + +1.8 658,375 - -0.0 658,375 - -0.2 658,380 - -0.4 658,380 - -0.4 658,380 - -0.5 658,380 - +2.0 658,469 + Rv0567 0.15 -0.1 658,470 - Rv0567 0.15 -0.2 658,560 + Rv0567 0.23 -0.5 658,560 + Rv0567 0.23 -1.4 658,561 - Rv0567 0.24 +0.4 658,604 - Rv0567 0.28 -0.4 658,604 - Rv0567 0.28 +0.4 658,604 - Rv0567 0.28 -1.4 658,735 + Rv0567 0.41 -0.1 659,211 + Rv0567 0.87 -1.0 659,237 - Rv0567 0.90 +0.0 659,334 + +0.2 659,334 + -0.5 659,334 + +0.3 659,334 + -0.5 659,335 - +0.0 659,338 + +0.2 659,339 - -0.9 659,437 + +0.3 659,437 + -0.1 659,438 - -0.8 659,438 - -0.9 659,612 + Rv0568 0.11 -0.1 659,612 + Rv0568 0.11 -0.7 659,613 - Rv0568 0.11 -0.1 659,613 - Rv0568 0.11 -1.4 659,613 - Rv0568 0.11 +0.1 659,613 - Rv0568 0.11 -0.2 659,613 - Rv0568 0.11 +0.1 659,613 - Rv0568 0.11 -0.3 659,858 - Rv0568 0.29 -0.4 659,923 - Rv0568 0.33 -1.4 660,086 + Rv0568 0.45 -0.3 660,086 + Rv0568 0.45 -0.1 660,087 - Rv0568 0.45 -0.1
Or see this region's nucleotide sequence