Experiment: L-Alanine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0112 and Rv0113 are separated by 73 nucleotides Rv0113 and Rv0114 are separated by 31 nucleotides Rv0114 and Rv0115 overlap by 1 nucleotides
Rv0112: Rv0112 - Possible GDP-mannose 4,6-dehydratase Gca (GDP-D-mannose dehydratase), at 136,289 to 137,245
Rv0112
Rv0113: Rv0113 - Probable sedoheptulose-7-phosphate isomerase GmhA (phosphoheptose isomerase), at 137,319 to 137,909
Rv0113
Rv0114: Rv0114 - Possible D-alpha,beta-D-heptose-1,7-biphosphate phosphatase GmhB (D-glycero-D-manno-heptose 7-phosphate kinase), at 137,941 to 138,513
Rv0114
Rv0115: Rv0115 - Possible D-alpha-D-heptose-7-phosphate kinase HddA, at 138,513 to 139,673
Rv0115
Position (kb) 137
138
139 Strain fitness (log2 ratio) -1
0
1
2 at 137.043 kb on + strand, within Rv0112 at 137.044 kb on - strand, within Rv0112 at 137.123 kb on + strand, within Rv0112 at 137.151 kb on + strand at 137.588 kb on - strand, within Rv0113 at 137.607 kb on + strand, within Rv0113 at 138.023 kb on - strand, within Rv0114 at 138.100 kb on + strand, within Rv0114 at 138.100 kb on + strand, within Rv0114 at 138.101 kb on - strand, within Rv0114 at 138.170 kb on + strand, within Rv0114 at 138.170 kb on + strand, within Rv0114 at 138.170 kb on + strand, within Rv0114 at 138.215 kb on + strand, within Rv0114 at 138.215 kb on + strand, within Rv0114 at 138.215 kb on + strand, within Rv0114 at 138.216 kb on - strand, within Rv0114 at 138.267 kb on + strand, within Rv0114 at 138.630 kb on + strand, within Rv0115 at 138.631 kb on - strand, within Rv0115 at 138.636 kb on + strand, within Rv0115 at 138.797 kb on + strand, within Rv0115 at 138.798 kb on - strand, within Rv0115 at 138.798 kb on - strand, within Rv0115 at 138.928 kb on - strand, within Rv0115 at 138.928 kb on - strand, within Rv0115 at 139.119 kb on + strand, within Rv0115 at 139.119 kb on + strand, within Rv0115 at 139.120 kb on - strand, within Rv0115 at 139.267 kb on + strand, within Rv0115 at 139.268 kb on - strand, within Rv0115 at 139.452 kb on - strand, within Rv0115 at 139.452 kb on - strand, within Rv0115 at 139.512 kb on - strand, within Rv0115
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine 10 mM (N) remove 137,043 + Rv0112 0.79 +0.3 137,044 - Rv0112 0.79 +0.0 137,123 + Rv0112 0.87 +1.1 137,151 + +0.8 137,588 - Rv0113 0.46 +1.0 137,607 + Rv0113 0.49 -0.6 138,023 - Rv0114 0.14 +0.4 138,100 + Rv0114 0.28 -0.0 138,100 + Rv0114 0.28 +0.3 138,101 - Rv0114 0.28 +0.4 138,170 + Rv0114 0.40 -0.5 138,170 + Rv0114 0.40 +0.7 138,170 + Rv0114 0.40 -0.8 138,215 + Rv0114 0.48 +0.2 138,215 + Rv0114 0.48 -0.0 138,215 + Rv0114 0.48 +0.4 138,216 - Rv0114 0.48 +0.2 138,267 + Rv0114 0.57 -0.1 138,630 + Rv0115 0.10 +0.2 138,631 - Rv0115 0.10 -0.6 138,636 + Rv0115 0.11 +1.1 138,797 + Rv0115 0.24 -0.0 138,798 - Rv0115 0.25 +0.9 138,798 - Rv0115 0.25 -0.5 138,928 - Rv0115 0.36 -1.0 138,928 - Rv0115 0.36 -0.4 139,119 + Rv0115 0.52 -0.6 139,119 + Rv0115 0.52 +0.4 139,120 - Rv0115 0.52 +1.8 139,267 + Rv0115 0.65 +0.1 139,268 - Rv0115 0.65 +0.2 139,452 - Rv0115 0.81 -0.3 139,452 - Rv0115 0.81 +1.1 139,512 - Rv0115 0.86 +0.1
Or see this region's nucleotide sequence