Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2154c

Experiment: L-Alanine 10 mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2153c and Rv2154c overlap by 4 nucleotidesRv2154c and Rv2155c are separated by 11 nucleotides Rv2153c: Rv2153c - Probable UPD-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase MurG, at 2,412,119 to 2,413,351 Rv2153c Rv2154c: Rv2154c - FtsW-like protein FtsW, at 2,413,348 to 2,414,922 Rv2154c Rv2155c: Rv2155c - Probable UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD, at 2,414,934 to 2,416,394 Rv2155c Position (kb) 2413 2414 2415Strain fitness (log2 ratio) -1 0 1at 2413.607 kb on + strand, within Rv2154cat 2413.608 kb on - strand, within Rv2154c

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine 10 mM (N)
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2,413,607 + Rv2154c 0.16 +0.6
2,413,608 - Rv2154c 0.17 +0.3

Or see this region's nucleotide sequence