Experiment: Palmitic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0851c and Rv0852 are separated by 90 nucleotides Rv0852 and Rv0853c are separated by 40 nucleotides Rv0853c and Rv0854 are separated by 64 nucleotides Rv0854 and Rv0855 are separated by 5 nucleotides
Rv0851c: Rv0851c - Probable short-chain type dehydrogenase/reductase, at 947,641 to 948,468
Rv0851c
Rv0852: Rv0852 - Possible fatty-acid-CoA ligase FadD16 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 948,559 to 949,395
Rv0852
Rv0853c: Rv0853c - Probable pyruvate or indole-3-pyruvate decarboxylase Pdc, at 949,436 to 951,118
Rv0853c
Rv0854: Rv0854 - Conserved protein, at 951,183 to 951,626
Rv0854
Rv0855: Rv0855 - Probable fatty-acid-CoA racemase Far, at 951,632 to 952,711
Rv0855
Position (kb) 949
950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2 at 948.481 kb on + strand at 948.575 kb on - strand at 948.819 kb on + strand, within Rv0852 at 948.935 kb on + strand, within Rv0852 at 949.068 kb on + strand, within Rv0852 at 949.068 kb on + strand, within Rv0852 at 949.336 kb on + strand at 949.653 kb on + strand, within Rv0853c at 950.314 kb on - strand, within Rv0853c at 950.597 kb on + strand, within Rv0853c at 950.597 kb on + strand, within Rv0853c at 950.597 kb on + strand, within Rv0853c at 950.597 kb on + strand, within Rv0853c at 950.597 kb on + strand, within Rv0853c at 950.598 kb on - strand, within Rv0853c at 950.598 kb on - strand, within Rv0853c at 950.598 kb on - strand, within Rv0853c at 950.598 kb on - strand, within Rv0853c at 951.003 kb on + strand at 951.060 kb on - strand at 951.060 kb on - strand at 951.078 kb on + strand at 951.078 kb on + strand at 951.130 kb on + strand at 951.131 kb on - strand at 951.146 kb on + strand at 951.171 kb on + strand at 951.208 kb on + strand at 951.208 kb on + strand at 951.209 kb on - strand at 951.213 kb on - strand at 951.388 kb on - strand, within Rv0854 at 951.388 kb on - strand, within Rv0854 at 951.388 kb on - strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.459 kb on + strand, within Rv0854 at 952.025 kb on + strand, within Rv0855
Per-strain Table
Position Strand Gene LocusTag Fraction Palmitic 100 uM (C) remove 948,481 + +0.3 948,575 - -0.3 948,819 + Rv0852 0.31 -0.1 948,935 + Rv0852 0.45 +2.0 949,068 + Rv0852 0.61 -0.4 949,068 + Rv0852 0.61 -0.4 949,336 + -1.1 949,653 + Rv0853c 0.13 +0.1 950,314 - Rv0853c 0.52 -0.4 950,597 + Rv0853c 0.69 +0.6 950,597 + Rv0853c 0.69 -0.4 950,597 + Rv0853c 0.69 +0.8 950,597 + Rv0853c 0.69 +1.3 950,597 + Rv0853c 0.69 -0.2 950,598 - Rv0853c 0.69 +0.1 950,598 - Rv0853c 0.69 +0.3 950,598 - Rv0853c 0.69 -0.5 950,598 - Rv0853c 0.69 -1.5 951,003 + -0.4 951,060 - -1.8 951,060 - +0.4 951,078 + +0.5 951,078 + -0.6 951,130 + -0.1 951,131 - -0.3 951,146 + -0.2 951,171 + -0.0 951,208 + +0.5 951,208 + -0.8 951,209 - -1.2 951,213 - +1.3 951,388 - Rv0854 0.46 -0.5 951,388 - Rv0854 0.46 -0.2 951,388 - Rv0854 0.46 +0.0 951,389 + Rv0854 0.46 -1.2 951,389 + Rv0854 0.46 -0.0 951,389 + Rv0854 0.46 -0.5 951,459 + Rv0854 0.62 -0.9 952,025 + Rv0855 0.36 +0.1
Or see this region's nucleotide sequence