Experiment: Palmitic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0724 and Rv0724A overlap by 4 nucleotides Rv0724A and Rv0725c overlap by 328 nucleotides Rv0725c and Rv0726c are separated by 92 nucleotides
Rv0724: Rv0724 - Possible protease IV SppA (endopeptidase IV) (signal peptide peptidase), at 815,663 to 817,534
Rv0724
Rv0724A: Rv0724A - Conserved hypothetical protein, at 817,531 to 817,866
Rv0724A
Rv0725c: Rv0725c - Conserved hypothetical protein, at 817,539 to 818,444
Rv0725c
Rv0726c: Rv0726c - Possible S-adenosylmethionine-dependent methyltransferase, at 818,537 to 819,640
Rv0726c
Position (kb) 817
818
819 Strain fitness (log2 ratio) -2
-1
0
1 at 816.798 kb on + strand, within Rv0724 at 817.151 kb on + strand, within Rv0724 at 817.151 kb on + strand, within Rv0724 at 817.151 kb on + strand, within Rv0724 at 817.323 kb on + strand, within Rv0724 at 817.352 kb on - strand at 817.622 kb on - strand at 817.700 kb on + strand at 817.701 kb on - strand at 817.880 kb on - strand, within Rv0725c at 817.975 kb on + strand, within Rv0725c at 818.171 kb on - strand, within Rv0725c at 818.256 kb on - strand, within Rv0725c at 818.453 kb on + strand at 818.453 kb on + strand at 818.686 kb on - strand, within Rv0726c at 818.686 kb on - strand, within Rv0726c at 818.721 kb on + strand, within Rv0726c at 818.721 kb on + strand, within Rv0726c at 818.722 kb on - strand, within Rv0726c at 818.832 kb on + strand, within Rv0726c at 818.833 kb on - strand, within Rv0726c at 818.862 kb on + strand, within Rv0726c at 818.970 kb on - strand, within Rv0726c at 819.055 kb on - strand, within Rv0726c
Per-strain Table
Position Strand Gene LocusTag Fraction Palmitic 100 uM (C) remove 816,798 + Rv0724 0.61 -0.4 817,151 + Rv0724 0.79 +0.2 817,151 + Rv0724 0.79 -0.0 817,151 + Rv0724 0.79 -1.1 817,323 + Rv0724 0.89 -0.4 817,352 - -0.6 817,622 - +0.9 817,700 + -0.3 817,701 - -0.6 817,880 - Rv0725c 0.38 +0.3 817,975 + Rv0725c 0.48 +0.4 818,171 - Rv0725c 0.70 -0.4 818,256 - Rv0725c 0.79 +0.7 818,453 + -0.2 818,453 + +0.2 818,686 - Rv0726c 0.13 -1.2 818,686 - Rv0726c 0.13 +0.3 818,721 + Rv0726c 0.17 -0.3 818,721 + Rv0726c 0.17 -0.2 818,722 - Rv0726c 0.17 +0.4 818,832 + Rv0726c 0.27 -0.0 818,833 - Rv0726c 0.27 +1.7 818,862 + Rv0726c 0.29 +0.5 818,970 - Rv0726c 0.39 -0.8 819,055 - Rv0726c 0.47 -2.4
Or see this region's nucleotide sequence