Experiment: Palmitic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0427c and Rv0428c are separated by 2 nucleotides Rv0428c and Rv0429c overlap by 1 nucleotides Rv0429c and Rv0430 are separated by 336 nucleotides
Rv0427c: Rv0427c - Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI), at 516,017 to 516,892
Rv0427c
Rv0428c: Rv0428c - GCN5-related N-acetyltransferase, at 516,895 to 517,803
Rv0428c
Rv0429c: Rv0429c - Probable polypeptide deformylase Def (PDF) (formylmethionine deformylase), at 517,803 to 518,396
Rv0429c
Rv0430: Rv0430 - Conserved hypothetical protein, at 518,733 to 519,041
Rv0430
Position (kb) 516
517
518 Strain fitness (log2 ratio) -1
0
1 at 516.199 kb on - strand, within Rv0427c at 516.230 kb on + strand, within Rv0427c at 516.441 kb on + strand, within Rv0427c at 516.669 kb on + strand, within Rv0427c at 516.896 kb on + strand at 516.904 kb on - strand at 516.932 kb on + strand at 517.007 kb on + strand, within Rv0428c at 517.181 kb on + strand, within Rv0428c at 517.181 kb on + strand, within Rv0428c at 517.182 kb on - strand, within Rv0428c at 517.182 kb on - strand, within Rv0428c at 517.235 kb on - strand, within Rv0428c at 517.465 kb on - strand, within Rv0428c at 517.474 kb on + strand, within Rv0428c at 517.495 kb on + strand, within Rv0428c at 517.760 kb on + strand at 518.405 kb on - strand at 518.409 kb on + strand at 518.410 kb on - strand at 518.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Palmitic 100 uM (C) remove 516,199 - Rv0427c 0.21 -0.9 516,230 + Rv0427c 0.24 -1.0 516,441 + Rv0427c 0.48 +0.1 516,669 + Rv0427c 0.74 +0.3 516,896 + -0.8 516,904 - -1.6 516,932 + +0.4 517,007 + Rv0428c 0.12 -0.3 517,181 + Rv0428c 0.31 -1.0 517,181 + Rv0428c 0.31 -0.2 517,182 - Rv0428c 0.32 -1.1 517,182 - Rv0428c 0.32 -0.0 517,235 - Rv0428c 0.37 -0.7 517,465 - Rv0428c 0.63 -0.2 517,474 + Rv0428c 0.64 -1.0 517,495 + Rv0428c 0.66 -1.0 517,760 + -0.1 518,405 - -0.2 518,409 + -0.4 518,410 - -0.6 518,424 + -0.4
Or see this region's nucleotide sequence