Experiment: Palmitic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0352 and Rv0353 overlap by 1 nucleotides Rv0353 and Rv0354c are separated by 249 nucleotides Rv0354c and Rv0355c are separated by 82 nucleotides
Rv0352: Rv0352 - Probable chaperone protein DnaJ1, at 422,452 to 423,639
Rv0352
Rv0353: Rv0353 - Probable heat shock protein transcriptional repressor HspR (MerR family), at 423,639 to 424,019
Rv0353
Rv0354c: Rv0354c - PPE family protein PPE7, at 424,269 to 424,694
Rv0354c
Rv0355c: Rv0355c - PPE family protein PPE8, at 424,777 to 434,679
Rv0355c
Position (kb) 424
425 Strain fitness (log2 ratio) -2
-1
0
1
2 at 423.631 kb on - strand at 423.728 kb on + strand, within Rv0353 at 423.728 kb on + strand, within Rv0353 at 423.728 kb on + strand, within Rv0353 at 423.732 kb on + strand, within Rv0353 at 423.732 kb on + strand, within Rv0353 at 423.733 kb on - strand, within Rv0353 at 423.733 kb on - strand, within Rv0353 at 424.031 kb on + strand at 424.263 kb on + strand at 424.263 kb on + strand at 424.264 kb on - strand at 424.264 kb on - strand at 424.270 kb on + strand at 424.271 kb on - strand at 424.604 kb on - strand, within Rv0354c at 424.632 kb on + strand, within Rv0354c at 424.632 kb on + strand, within Rv0354c at 424.632 kb on + strand, within Rv0354c at 424.633 kb on - strand, within Rv0354c at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.675 kb on + strand at 424.675 kb on + strand at 424.675 kb on + strand at 424.675 kb on + strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.728 kb on - strand at 424.773 kb on + strand at 424.797 kb on - strand at 424.797 kb on - strand at 424.844 kb on - strand at 424.844 kb on - strand at 424.973 kb on + strand at 424.974 kb on - strand at 424.974 kb on - strand at 424.974 kb on - strand at 424.974 kb on - strand at 425.004 kb on - strand at 425.050 kb on + strand at 425.050 kb on + strand at 425.051 kb on - strand at 425.063 kb on + strand at 425.064 kb on - strand at 425.154 kb on - strand at 425.154 kb on - strand at 425.230 kb on + strand at 425.231 kb on - strand at 425.538 kb on - strand at 425.538 kb on - strand at 425.538 kb on - strand at 425.567 kb on + strand at 425.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Palmitic 100 uM (C) remove 423,631 - -0.1 423,728 + Rv0353 0.23 +0.1 423,728 + Rv0353 0.23 -2.4 423,728 + Rv0353 0.23 +0.6 423,732 + Rv0353 0.24 -0.4 423,732 + Rv0353 0.24 +0.4 423,733 - Rv0353 0.25 +0.4 423,733 - Rv0353 0.25 +0.2 424,031 + +0.1 424,263 + +0.7 424,263 + -0.3 424,264 - -0.4 424,264 - +0.9 424,270 + -0.6 424,271 - +0.2 424,604 - Rv0354c 0.79 +0.7 424,632 + Rv0354c 0.85 -0.1 424,632 + Rv0354c 0.85 +0.4 424,632 + Rv0354c 0.85 +0.5 424,633 - Rv0354c 0.85 +0.6 424,653 + +0.1 424,653 + -0.4 424,653 + -0.3 424,653 + -0.1 424,653 + +1.0 424,653 + -0.1 424,653 + -1.0 424,654 - -0.4 424,654 - -0.5 424,654 - +0.1 424,654 - -2.2 424,654 - -0.1 424,654 - +2.2 424,675 + -0.2 424,675 + -0.0 424,675 + -0.2 424,675 + +1.4 424,676 - -1.7 424,676 - -0.4 424,676 - -0.3 424,676 - +0.8 424,676 - +0.5 424,676 - -0.1 424,676 - -0.8 424,728 - -0.5 424,773 + -0.1 424,797 - -0.4 424,797 - +0.1 424,844 - -0.1 424,844 - +0.4 424,973 + +0.4 424,974 - -0.8 424,974 - -0.1 424,974 - -0.4 424,974 - +0.2 425,004 - +2.4 425,050 + -1.2 425,050 + -0.3 425,051 - -0.6 425,063 + -1.6 425,064 - -0.0 425,154 - +0.3 425,154 - +0.3 425,230 + +1.6 425,231 - -0.4 425,538 - -0.7 425,538 - -0.2 425,538 - -0.0 425,567 + -0.1 425,628 - +0.6
Or see this region's nucleotide sequence