Experiment: Palmitic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0182c and Rv0183 overlap by 53 nucleotides Rv0183 and Rv0184 are separated by 41 nucleotides Rv0184 and Rv0185 overlap by 4 nucleotides
Rv0182c: Rv0182c - Probable alternative RNA polymerase sigma factor SigG (RNA polymerase ECF type sigma factor), at 213,028 to 214,140
Rv0182c
Rv0183: Rv0183 - Possible lysophospholipase, at 214,088 to 214,927
Rv0183
Rv0184: Rv0184 - Conserved hypothetical protein, at 214,969 to 215,718
Rv0184
Rv0185: Rv0185 - Conserved hypothetical protein, at 215,715 to 216,224
Rv0185
Position (kb) 214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.124 kb on + strand at 213.161 kb on + strand, within Rv0182c at 213.161 kb on + strand, within Rv0182c at 213.162 kb on - strand, within Rv0182c at 213.162 kb on - strand, within Rv0182c at 213.275 kb on + strand, within Rv0182c at 213.287 kb on + strand, within Rv0182c at 213.287 kb on + strand, within Rv0182c at 213.287 kb on + strand, within Rv0182c at 213.288 kb on - strand, within Rv0182c at 213.348 kb on - strand, within Rv0182c at 213.367 kb on - strand, within Rv0182c at 213.367 kb on - strand, within Rv0182c at 213.475 kb on - strand, within Rv0182c at 213.475 kb on - strand, within Rv0182c at 213.554 kb on - strand, within Rv0182c at 213.821 kb on - strand, within Rv0182c at 213.848 kb on + strand, within Rv0182c at 213.849 kb on - strand, within Rv0182c at 213.849 kb on - strand, within Rv0182c at 213.849 kb on - strand, within Rv0182c at 213.921 kb on - strand, within Rv0182c at 214.087 kb on - strand at 214.093 kb on + strand at 214.093 kb on + strand at 214.145 kb on + strand at 214.146 kb on - strand at 214.146 kb on - strand at 214.268 kb on + strand, within Rv0183 at 214.268 kb on + strand, within Rv0183 at 214.317 kb on + strand, within Rv0183 at 214.318 kb on - strand, within Rv0183 at 214.318 kb on - strand, within Rv0183 at 214.383 kb on - strand, within Rv0183 at 214.442 kb on + strand, within Rv0183 at 214.444 kb on - strand, within Rv0183 at 214.466 kb on + strand, within Rv0183 at 214.466 kb on + strand, within Rv0183 at 214.467 kb on - strand, within Rv0183 at 214.628 kb on + strand, within Rv0183 at 214.628 kb on + strand, within Rv0183 at 214.628 kb on + strand, within Rv0183 at 214.629 kb on - strand, within Rv0183 at 214.629 kb on - strand, within Rv0183 at 214.629 kb on - strand, within Rv0183 at 214.744 kb on - strand, within Rv0183 at 214.744 kb on - strand, within Rv0183 at 215.200 kb on + strand, within Rv0184 at 215.200 kb on + strand, within Rv0184 at 215.318 kb on + strand, within Rv0184 at 215.319 kb on - strand, within Rv0184 at 215.319 kb on - strand, within Rv0184 at 215.320 kb on + strand, within Rv0184 at 215.761 kb on - strand at 215.895 kb on + strand, within Rv0185 at 215.895 kb on + strand, within Rv0185 at 215.896 kb on - strand, within Rv0185
Per-strain Table
Position Strand Gene LocusTag Fraction Palmitic 100 uM (C) remove 213,124 + +0.2 213,161 + Rv0182c 0.12 -0.0 213,161 + Rv0182c 0.12 +0.9 213,162 - Rv0182c 0.12 -0.7 213,162 - Rv0182c 0.12 +0.0 213,275 + Rv0182c 0.22 -0.0 213,287 + Rv0182c 0.23 -0.4 213,287 + Rv0182c 0.23 -0.9 213,287 + Rv0182c 0.23 -0.3 213,288 - Rv0182c 0.23 -0.6 213,348 - Rv0182c 0.29 -0.4 213,367 - Rv0182c 0.30 +0.2 213,367 - Rv0182c 0.30 -1.9 213,475 - Rv0182c 0.40 -0.5 213,475 - Rv0182c 0.40 +0.3 213,554 - Rv0182c 0.47 +1.0 213,821 - Rv0182c 0.71 +0.4 213,848 + Rv0182c 0.74 -0.1 213,849 - Rv0182c 0.74 +0.6 213,849 - Rv0182c 0.74 -0.2 213,849 - Rv0182c 0.74 -1.2 213,921 - Rv0182c 0.80 +1.2 214,087 - -0.3 214,093 + -0.3 214,093 + -1.0 214,145 + -0.3 214,146 - -0.2 214,146 - -1.3 214,268 + Rv0183 0.21 -1.8 214,268 + Rv0183 0.21 -0.7 214,317 + Rv0183 0.27 -0.3 214,318 - Rv0183 0.27 +0.4 214,318 - Rv0183 0.27 -0.3 214,383 - Rv0183 0.35 -1.2 214,442 + Rv0183 0.42 -1.3 214,444 - Rv0183 0.42 -0.2 214,466 + Rv0183 0.45 -0.0 214,466 + Rv0183 0.45 -0.1 214,467 - Rv0183 0.45 -0.8 214,628 + Rv0183 0.64 +2.0 214,628 + Rv0183 0.64 -1.7 214,628 + Rv0183 0.64 -0.2 214,629 - Rv0183 0.64 -0.1 214,629 - Rv0183 0.64 -0.4 214,629 - Rv0183 0.64 -0.7 214,744 - Rv0183 0.78 -0.3 214,744 - Rv0183 0.78 -0.5 215,200 + Rv0184 0.31 -0.2 215,200 + Rv0184 0.31 +0.3 215,318 + Rv0184 0.47 -0.4 215,319 - Rv0184 0.47 +2.4 215,319 - Rv0184 0.47 +0.1 215,320 + Rv0184 0.47 -0.0 215,761 - -0.9 215,895 + Rv0185 0.35 +0.7 215,895 + Rv0185 0.35 +0.1 215,896 - Rv0185 0.35 -0.2
Or see this region's nucleotide sequence