Experiment: Palmitic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0515 and Rv0516c overlap by 4 nucleotides Rv0516c and Rv0517 are separated by 210 nucleotides
Rv0515: Rv0515 - Conserved 13E12 repeat family protein, at 606,551 to 608,062
Rv0515
Rv0516c: Rv0516c - Possible anti-anti-sigma factor, at 608,059 to 608,535
Rv0516c
Rv0517: Rv0517 - Possible membrane acyltransferase, at 608,746 to 610,056
Rv0517
Position (kb) 608
609 Strain fitness (log2 ratio) -2
-1
0
1
2 at 608.083 kb on + strand at 608.137 kb on - strand, within Rv0516c at 608.197 kb on + strand, within Rv0516c at 608.197 kb on + strand, within Rv0516c at 608.197 kb on + strand, within Rv0516c at 608.197 kb on + strand, within Rv0516c at 608.227 kb on + strand, within Rv0516c at 608.228 kb on - strand, within Rv0516c at 608.439 kb on - strand, within Rv0516c at 608.462 kb on + strand, within Rv0516c at 608.463 kb on - strand, within Rv0516c at 608.463 kb on - strand, within Rv0516c at 608.613 kb on + strand at 608.613 kb on + strand at 608.704 kb on + strand at 608.704 kb on + strand at 608.705 kb on - strand at 608.746 kb on - strand at 608.746 kb on - strand at 608.782 kb on - strand at 608.894 kb on + strand, within Rv0517 at 608.895 kb on - strand, within Rv0517 at 608.987 kb on + strand, within Rv0517 at 608.988 kb on - strand, within Rv0517 at 608.988 kb on - strand, within Rv0517 at 608.988 kb on - strand, within Rv0517 at 609.031 kb on + strand, within Rv0517 at 609.116 kb on - strand, within Rv0517 at 609.116 kb on - strand, within Rv0517 at 609.214 kb on + strand, within Rv0517 at 609.214 kb on + strand, within Rv0517 at 609.214 kb on + strand, within Rv0517 at 609.215 kb on - strand, within Rv0517 at 609.215 kb on - strand, within Rv0517 at 609.215 kb on - strand, within Rv0517 at 609.316 kb on + strand, within Rv0517 at 609.317 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517
Per-strain Table
Position Strand Gene LocusTag Fraction Palmitic 100 uM (C) remove 608,083 + -1.1 608,137 - Rv0516c 0.16 -2.0 608,197 + Rv0516c 0.29 -1.0 608,197 + Rv0516c 0.29 +0.0 608,197 + Rv0516c 0.29 -0.6 608,197 + Rv0516c 0.29 -0.6 608,227 + Rv0516c 0.35 -0.7 608,228 - Rv0516c 0.35 -0.9 608,439 - Rv0516c 0.80 -0.7 608,462 + Rv0516c 0.84 +0.3 608,463 - Rv0516c 0.85 -1.4 608,463 - Rv0516c 0.85 -0.3 608,613 + -0.7 608,613 + -0.5 608,704 + -1.2 608,704 + +0.1 608,705 - +0.2 608,746 - +0.2 608,746 - -0.3 608,782 - -0.1 608,894 + Rv0517 0.11 -0.9 608,895 - Rv0517 0.11 +1.8 608,987 + Rv0517 0.18 +0.1 608,988 - Rv0517 0.18 -0.4 608,988 - Rv0517 0.18 -0.1 608,988 - Rv0517 0.18 +0.3 609,031 + Rv0517 0.22 -0.6 609,116 - Rv0517 0.28 +0.4 609,116 - Rv0517 0.28 -0.5 609,214 + Rv0517 0.36 -1.0 609,214 + Rv0517 0.36 -0.2 609,214 + Rv0517 0.36 +2.2 609,215 - Rv0517 0.36 -0.3 609,215 - Rv0517 0.36 +0.9 609,215 - Rv0517 0.36 +0.4 609,316 + Rv0517 0.43 -2.0 609,317 - Rv0517 0.44 +0.6 609,449 - Rv0517 0.54 -0.2 609,449 - Rv0517 0.54 -0.8 609,449 - Rv0517 0.54 -1.0 609,449 - Rv0517 0.54 +1.2 609,451 - Rv0517 0.54 -0.0 609,451 - Rv0517 0.54 -0.6 609,451 - Rv0517 0.54 -0.5 609,451 - Rv0517 0.54 -0.0
Or see this region's nucleotide sequence