Experiment: Palmitic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0402c and Rv0403c overlap by 4 nucleotides Rv0403c and Rv0404 are separated by 320 nucleotides
Rv0402c: Rv0402c - Probable conserved transmembrane transport protein MmpL1, at 480,355 to 483,231
Rv0402c
Rv0403c: Rv0403c - Probable conserved membrane protein MmpS1, at 483,228 to 483,656
Rv0403c
Rv0404: Rv0404 - Fatty-acid-AMP ligase FadD30 (fatty-acid-AMP synthetase) (fatty-acid-AMP synthase), at 483,977 to 485,734
Rv0404
Position (kb) 483
484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.301 kb on - strand, within Rv0402c at 482.366 kb on + strand, within Rv0402c at 482.436 kb on - strand, within Rv0402c at 482.487 kb on + strand, within Rv0402c at 482.488 kb on - strand, within Rv0402c at 482.597 kb on + strand, within Rv0402c at 482.671 kb on + strand, within Rv0402c at 482.672 kb on - strand, within Rv0402c at 482.711 kb on + strand, within Rv0402c at 482.711 kb on + strand, within Rv0402c at 482.822 kb on + strand, within Rv0402c at 482.823 kb on - strand, within Rv0402c at 482.823 kb on - strand, within Rv0402c at 482.939 kb on + strand, within Rv0402c at 483.073 kb on + strand at 483.135 kb on + strand at 483.387 kb on - strand, within Rv0403c at 483.387 kb on - strand, within Rv0403c at 483.446 kb on - strand, within Rv0403c at 483.488 kb on - strand, within Rv0403c at 483.615 kb on + strand at 483.615 kb on + strand at 483.616 kb on - strand at 483.616 kb on - strand at 483.616 kb on - strand at 483.815 kb on + strand at 483.987 kb on + strand at 484.199 kb on + strand, within Rv0404 at 484.199 kb on + strand, within Rv0404 at 484.300 kb on - strand, within Rv0404 at 484.386 kb on + strand, within Rv0404 at 484.387 kb on - strand, within Rv0404 at 484.391 kb on - strand, within Rv0404 at 484.411 kb on + strand, within Rv0404 at 484.634 kb on + strand, within Rv0404
Per-strain Table
Position Strand Gene LocusTag Fraction Palmitic 100 uM (C) remove 482,301 - Rv0402c 0.68 +0.1 482,366 + Rv0402c 0.70 -0.2 482,436 - Rv0402c 0.72 -0.6 482,487 + Rv0402c 0.74 -1.6 482,488 - Rv0402c 0.74 -0.3 482,597 + Rv0402c 0.78 +1.8 482,671 + Rv0402c 0.81 -0.2 482,672 - Rv0402c 0.81 -0.2 482,711 + Rv0402c 0.82 +0.8 482,711 + Rv0402c 0.82 +0.3 482,822 + Rv0402c 0.86 +0.2 482,823 - Rv0402c 0.86 -0.5 482,823 - Rv0402c 0.86 -0.6 482,939 + Rv0402c 0.90 -0.4 483,073 + +0.8 483,135 + -0.3 483,387 - Rv0403c 0.37 -0.5 483,387 - Rv0403c 0.37 -0.7 483,446 - Rv0403c 0.51 -0.4 483,488 - Rv0403c 0.61 -0.7 483,615 + -0.9 483,615 + -0.2 483,616 - -0.8 483,616 - -0.4 483,616 - -0.1 483,815 + +0.1 483,987 + -1.3 484,199 + Rv0404 0.13 -0.9 484,199 + Rv0404 0.13 +0.1 484,300 - Rv0404 0.18 -1.8 484,386 + Rv0404 0.23 -1.4 484,387 - Rv0404 0.23 -0.2 484,391 - Rv0404 0.24 +0.8 484,411 + Rv0404 0.25 -1.0 484,634 + Rv0404 0.37 +0.1
Or see this region's nucleotide sequence