Experiment: Stearic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3305c and Rv3306c overlap by 4 nucleotides Rv3306c and Rv3307 are separated by 64 nucleotides Rv3307 and Rv3308 are separated by 3 nucleotides
Rv3305c: Rv3305c - Possible N-acyl-L-amino acid amidohydrolase AmiA1 (N-acyl-L-amino acid aminohydrolase), at 3,691,639 to 3,692,808
Rv3305c
Rv3306c: Rv3306c - Probable amidohydrolase AmiB1 (aminohydrolase), at 3,692,805 to 3,693,989
Rv3306c
Rv3307: Rv3307 - Probable purine nucleoside phosphorylase DeoD (inosine phosphorylase) (PNP), at 3,694,054 to 3,694,860
Rv3307
Rv3308: Rv3308 - Probable phosphomannomutase PmmB (phosphomannose mutase), at 3,694,864 to 3,696,468
Rv3308
Position (kb)
3692
3693
3694 Strain fitness (log2 ratio)
-2
-1
0
1 at 3691.860 kb on + strand, within Rv3305c at 3691.963 kb on + strand, within Rv3305c at 3692.694 kb on + strand at 3692.703 kb on - strand at 3692.727 kb on - strand at 3693.278 kb on - strand, within Rv3306c at 3693.375 kb on + strand, within Rv3306c at 3693.419 kb on + strand, within Rv3306c at 3693.998 kb on + strand at 3694.040 kb on + strand at 3694.268 kb on + strand, within Rv3307 at 3694.349 kb on - strand, within Rv3307 at 3694.396 kb on - strand, within Rv3307 at 3694.396 kb on - strand, within Rv3307 at 3694.396 kb on - strand, within Rv3307 at 3694.532 kb on - strand, within Rv3307 at 3694.615 kb on + strand, within Rv3307 at 3694.615 kb on + strand, within Rv3307 at 3694.730 kb on + strand, within Rv3307 at 3694.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stearic 100 uM (C) remove 3,691,860 + Rv3305c 0.19 -0.6 3,691,963 + Rv3305c 0.28 -0.8 3,692,694 + +0.9 3,692,703 - -0.3 3,692,727 - -0.4 3,693,278 - Rv3306c 0.40 -0.8 3,693,375 + Rv3306c 0.48 -2.3 3,693,419 + Rv3306c 0.52 +0.9 3,693,998 + -0.4 3,694,040 + -0.3 3,694,268 + Rv3307 0.27 -0.5 3,694,349 - Rv3307 0.37 -0.5 3,694,396 - Rv3307 0.42 -0.5 3,694,396 - Rv3307 0.42 +0.1 3,694,396 - Rv3307 0.42 -0.4 3,694,532 - Rv3307 0.59 -0.7 3,694,615 + Rv3307 0.70 -0.5 3,694,615 + Rv3307 0.70 -0.7 3,694,730 + Rv3307 0.84 -0.5 3,694,858 + +0.4
Or see this region's nucleotide sequence