Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0924c

Experiment: Stearic 100 uM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0923c and Rv0924c are separated by 0 nucleotidesRv0924c and Rv0925c are separated by 31 nucleotidesRv0925c and Rv0926c are separated by 76 nucleotides Rv0923c: Rv0923c - Conserved hypothetical protein, at 1,029,513 to 1,030,577 Rv0923c Rv0924c: Rv0924c - Divalent cation-transport integral membrane protein MntH (BRAMP) (MRAMP), at 1,030,578 to 1,031,864 Rv0924c Rv0925c: Rv0925c - Conserved protein, at 1,031,896 to 1,032,633 Rv0925c Rv0926c: Rv0926c - Conserved hypothetical protein, at 1,032,710 to 1,033,786 Rv0926c Position (kb) 1030 1031 1032Strain fitness (log2 ratio) -2 -1 0 1 2at 1029.627 kb on + strand, within Rv0923cat 1029.922 kb on + strand, within Rv0923cat 1029.922 kb on + strand, within Rv0923cat 1029.922 kb on + strand, within Rv0923cat 1029.946 kb on + strand, within Rv0923cat 1029.946 kb on + strand, within Rv0923cat 1030.171 kb on + strand, within Rv0923cat 1030.171 kb on + strand, within Rv0923cat 1030.228 kb on - strand, within Rv0923cat 1030.231 kb on + strand, within Rv0923cat 1030.273 kb on + strand, within Rv0923cat 1030.273 kb on + strand, within Rv0923cat 1030.274 kb on - strand, within Rv0923cat 1030.274 kb on - strand, within Rv0923cat 1030.274 kb on - strand, within Rv0923cat 1030.555 kb on + strandat 1030.556 kb on - strandat 1030.556 kb on - strandat 1030.556 kb on - strandat 1030.737 kb on - strand, within Rv0924cat 1030.796 kb on + strand, within Rv0924cat 1030.827 kb on + strand, within Rv0924cat 1030.828 kb on - strand, within Rv0924cat 1030.891 kb on + strand, within Rv0924cat 1030.892 kb on - strand, within Rv0924cat 1031.675 kb on - strand, within Rv0924cat 1031.728 kb on + strand, within Rv0924cat 1031.963 kb on + strandat 1031.963 kb on + strandat 1032.084 kb on - strand, within Rv0925cat 1032.084 kb on - strand, within Rv0925cat 1032.084 kb on - strand, within Rv0925cat 1032.144 kb on - strand, within Rv0925cat 1032.144 kb on - strand, within Rv0925cat 1032.144 kb on - strand, within Rv0925cat 1032.162 kb on + strand, within Rv0925cat 1032.163 kb on - strand, within Rv0925cat 1032.240 kb on - strand, within Rv0925cat 1032.245 kb on + strand, within Rv0925cat 1032.246 kb on - strand, within Rv0925cat 1032.246 kb on - strand, within Rv0925cat 1032.246 kb on - strand, within Rv0925cat 1032.431 kb on - strand, within Rv0925cat 1032.442 kb on + strand, within Rv0925cat 1032.634 kb on - strandat 1032.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stearic 100 uM (C)
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1,029,627 + Rv0923c 0.11 -0.0
1,029,922 + Rv0923c 0.38 -0.7
1,029,922 + Rv0923c 0.38 -0.2
1,029,922 + Rv0923c 0.38 +0.2
1,029,946 + Rv0923c 0.41 +1.9
1,029,946 + Rv0923c 0.41 +0.2
1,030,171 + Rv0923c 0.62 +0.0
1,030,171 + Rv0923c 0.62 -0.5
1,030,228 - Rv0923c 0.67 -0.7
1,030,231 + Rv0923c 0.67 -0.2
1,030,273 + Rv0923c 0.71 +0.9
1,030,273 + Rv0923c 0.71 +0.3
1,030,274 - Rv0923c 0.71 +0.0
1,030,274 - Rv0923c 0.71 -0.0
1,030,274 - Rv0923c 0.71 -0.3
1,030,555 + -0.3
1,030,556 - +0.5
1,030,556 - +0.1
1,030,556 - -0.6
1,030,737 - Rv0924c 0.12 +0.7
1,030,796 + Rv0924c 0.17 -0.7
1,030,827 + Rv0924c 0.19 -1.1
1,030,828 - Rv0924c 0.19 -2.6
1,030,891 + Rv0924c 0.24 -0.6
1,030,892 - Rv0924c 0.24 -1.0
1,031,675 - Rv0924c 0.85 -0.9
1,031,728 + Rv0924c 0.89 -0.8
1,031,963 + -0.5
1,031,963 + +0.5
1,032,084 - Rv0925c 0.25 -0.8
1,032,084 - Rv0925c 0.25 +0.6
1,032,084 - Rv0925c 0.25 +0.2
1,032,144 - Rv0925c 0.34 -1.3
1,032,144 - Rv0925c 0.34 +0.6
1,032,144 - Rv0925c 0.34 +0.0
1,032,162 + Rv0925c 0.36 -0.4
1,032,163 - Rv0925c 0.36 -1.4
1,032,240 - Rv0925c 0.47 +0.2
1,032,245 + Rv0925c 0.47 -0.4
1,032,246 - Rv0925c 0.47 -0.4
1,032,246 - Rv0925c 0.47 -0.3
1,032,246 - Rv0925c 0.47 -1.0
1,032,431 - Rv0925c 0.72 +0.2
1,032,442 + Rv0925c 0.74 +1.7
1,032,634 - -0.1
1,032,634 - -0.8

Or see this region's nucleotide sequence