Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0907

Experiment: Stearic 100 uM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0906 and Rv0907 are separated by 73 nucleotidesRv0907 and Rv0908 overlap by 4 nucleotides Rv0906: Rv0906 - Conserved protein, at 1,008,944 to 1,010,062 Rv0906 Rv0907: Rv0907 - Conserved protein, at 1,010,136 to 1,011,734 Rv0907 Rv0908: Rv0908 - Probable metal cation transporter ATPase P-type CtpE, at 1,011,731 to 1,014,124 Rv0908 Position (kb) 1010 1011 1012Strain fitness (log2 ratio) -1 0 1 2at 1009.173 kb on + strand, within Rv0906at 1009.318 kb on + strand, within Rv0906at 1009.445 kb on + strand, within Rv0906at 1009.803 kb on - strand, within Rv0906at 1009.803 kb on - strand, within Rv0906at 1010.061 kb on - strandat 1010.355 kb on - strand, within Rv0907at 1010.623 kb on + strand, within Rv0907at 1010.761 kb on - strand, within Rv0907at 1010.853 kb on + strand, within Rv0907at 1010.877 kb on - strand, within Rv0907at 1011.015 kb on - strand, within Rv0907at 1011.015 kb on - strand, within Rv0907at 1011.060 kb on + strand, within Rv0907at 1012.298 kb on + strand, within Rv0908at 1012.298 kb on + strand, within Rv0908

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Per-strain Table

Position Strand Gene LocusTag Fraction Stearic 100 uM (C)
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1,009,173 + Rv0906 0.20 -0.3
1,009,318 + Rv0906 0.33 -0.1
1,009,445 + Rv0906 0.45 +0.1
1,009,803 - Rv0906 0.77 -0.4
1,009,803 - Rv0906 0.77 -0.6
1,010,061 - -0.5
1,010,355 - Rv0907 0.14 +0.7
1,010,623 + Rv0907 0.30 -0.4
1,010,761 - Rv0907 0.39 -0.8
1,010,853 + Rv0907 0.45 -1.3
1,010,877 - Rv0907 0.46 -0.9
1,011,015 - Rv0907 0.55 -0.8
1,011,015 - Rv0907 0.55 -0.1
1,011,060 + Rv0907 0.58 +1.9
1,012,298 + Rv0908 0.24 -1.1
1,012,298 + Rv0908 0.24 -1.1

Or see this region's nucleotide sequence