Experiment: Stearic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0347 and Rv0348 are separated by 2 nucleotides Rv0348 and Rv0349 are separated by 2 nucleotides Rv0349 and Rv0350 are separated by 226 nucleotides
Rv0347: Rv0347 - Probable conserved membrane protein, at 417,304 to 418,290
Rv0347
Rv0348: Rv0348 - Possible transcriptional regulatory protein, at 418,293 to 418,946
Rv0348
Rv0349: Rv0349 - Hypothetical protein, at 418,949 to 419,608
Rv0349
Rv0350: Rv0350 - Probable chaperone protein DnaK (heat shock protein 70) (heat shock 70 kDa protein) (HSP70), at 419,835 to 421,712
Rv0350
Position (kb) 418
419 Strain fitness (log2 ratio) -1
0
1
2
3 at 417.350 kb on + strand at 418.257 kb on + strand at 418.258 kb on - strand at 418.419 kb on + strand, within Rv0348 at 418.840 kb on - strand, within Rv0348 at 418.844 kb on - strand, within Rv0348 at 418.860 kb on - strand, within Rv0348 at 418.903 kb on - strand at 418.931 kb on - strand at 418.988 kb on + strand at 418.988 kb on + strand at 418.988 kb on + strand at 418.988 kb on + strand at 418.989 kb on - strand at 418.989 kb on - strand at 418.989 kb on - strand at 418.989 kb on - strand at 418.989 kb on - strand at 419.339 kb on + strand, within Rv0349 at 419.339 kb on + strand, within Rv0349 at 419.340 kb on - strand, within Rv0349 at 419.340 kb on - strand, within Rv0349 at 419.375 kb on + strand, within Rv0349 at 419.376 kb on - strand, within Rv0349 at 419.560 kb on - strand at 419.646 kb on + strand at 419.646 kb on + strand at 419.647 kb on - strand at 419.647 kb on - strand at 419.647 kb on - strand at 419.703 kb on + strand at 419.703 kb on + strand at 419.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stearic 100 uM (C) remove 417,350 + -0.5 418,257 + +0.8 418,258 - -1.6 418,419 + Rv0348 0.19 -0.9 418,840 - Rv0348 0.84 -0.3 418,844 - Rv0348 0.84 -1.5 418,860 - Rv0348 0.87 +0.5 418,903 - -0.2 418,931 - -0.5 418,988 + -0.0 418,988 + +2.9 418,988 + +1.9 418,988 + -1.3 418,989 - -0.8 418,989 - +0.9 418,989 - -0.5 418,989 - +0.3 418,989 - +0.1 419,339 + Rv0349 0.59 -0.9 419,339 + Rv0349 0.59 +0.0 419,340 - Rv0349 0.59 -1.1 419,340 - Rv0349 0.59 +0.1 419,375 + Rv0349 0.65 +0.1 419,376 - Rv0349 0.65 +1.0 419,560 - +0.0 419,646 + +2.7 419,646 + +0.3 419,647 - +0.0 419,647 - -0.6 419,647 - -0.4 419,703 + +0.3 419,703 + +1.6 419,716 - -0.6
Or see this region's nucleotide sequence