Experiment: Stearic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0172 and Rv0173 overlap by 4 nucleotides Rv0173 and Rv0174 overlap by 7 nucleotides
Rv0172: Rv0172 - Mce-family protein Mce1D, at 202,476 to 204,068
Rv0172
Rv0173: Rv0173 - Possible Mce-family lipoprotein LprK (Mce-family lipoprotein Mce1E), at 204,065 to 205,237
Rv0173
Rv0174: Rv0174 - Mce-family protein Mce1F, at 205,231 to 206,778
Rv0174
Position (kb) 204
205
206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 203.114 kb on - strand, within Rv0172 at 203.143 kb on + strand, within Rv0172 at 203.319 kb on - strand, within Rv0172 at 203.424 kb on + strand, within Rv0172 at 203.425 kb on - strand, within Rv0172 at 203.425 kb on - strand, within Rv0172 at 203.425 kb on - strand, within Rv0172 at 203.689 kb on - strand, within Rv0172 at 203.726 kb on + strand, within Rv0172 at 203.910 kb on + strand at 203.911 kb on - strand at 203.966 kb on - strand at 203.993 kb on - strand at 203.993 kb on - strand at 204.218 kb on + strand, within Rv0173 at 204.227 kb on + strand, within Rv0173 at 204.228 kb on - strand, within Rv0173 at 204.691 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.774 kb on + strand, within Rv0173 at 204.838 kb on - strand, within Rv0173 at 204.950 kb on + strand, within Rv0173 at 204.950 kb on + strand, within Rv0173 at 204.951 kb on - strand, within Rv0173 at 205.028 kb on + strand, within Rv0173 at 205.029 kb on - strand, within Rv0173 at 205.029 kb on - strand, within Rv0173 at 205.062 kb on - strand, within Rv0173 at 205.062 kb on - strand, within Rv0173 at 205.212 kb on + strand at 205.213 kb on - strand at 205.309 kb on + strand at 205.313 kb on - strand at 205.313 kb on - strand at 205.388 kb on - strand, within Rv0174 at 205.416 kb on + strand, within Rv0174 at 205.588 kb on + strand, within Rv0174 at 205.588 kb on + strand, within Rv0174 at 205.589 kb on - strand, within Rv0174 at 205.589 kb on - strand, within Rv0174 at 206.063 kb on - strand, within Rv0174 at 206.180 kb on - strand, within Rv0174
Per-strain Table
Position Strand Gene LocusTag Fraction Stearic 100 uM (C) remove 203,114 - Rv0172 0.40 -1.8 203,143 + Rv0172 0.42 -1.3 203,319 - Rv0172 0.53 +1.9 203,424 + Rv0172 0.60 -1.1 203,425 - Rv0172 0.60 -2.3 203,425 - Rv0172 0.60 -1.1 203,425 - Rv0172 0.60 -0.1 203,689 - Rv0172 0.76 -1.0 203,726 + Rv0172 0.78 -2.6 203,910 + -0.3 203,911 - -1.8 203,966 - -0.3 203,993 - -1.8 203,993 - -2.0 204,218 + Rv0173 0.13 -2.7 204,227 + Rv0173 0.14 -0.7 204,228 - Rv0173 0.14 -0.7 204,691 + Rv0173 0.53 -1.8 204,728 + Rv0173 0.57 -1.2 204,728 + Rv0173 0.57 -1.6 204,728 + Rv0173 0.57 -0.4 204,728 + Rv0173 0.57 -0.5 204,774 + Rv0173 0.60 -1.2 204,838 - Rv0173 0.66 +1.6 204,950 + Rv0173 0.75 -2.6 204,950 + Rv0173 0.75 -1.1 204,951 - Rv0173 0.76 -2.0 205,028 + Rv0173 0.82 -0.8 205,029 - Rv0173 0.82 -2.8 205,029 - Rv0173 0.82 -0.9 205,062 - Rv0173 0.85 -1.3 205,062 - Rv0173 0.85 -2.3 205,212 + +0.3 205,213 - +1.9 205,309 + -1.0 205,313 - -0.7 205,313 - -0.9 205,388 - Rv0174 0.10 -1.4 205,416 + Rv0174 0.12 -0.9 205,588 + Rv0174 0.23 -3.1 205,588 + Rv0174 0.23 +0.9 205,589 - Rv0174 0.23 +0.3 205,589 - Rv0174 0.23 -1.2 206,063 - Rv0174 0.54 -0.4 206,180 - Rv0174 0.61 -2.0
Or see this region's nucleotide sequence