Experiment: Stearic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3663c and Rv3664c overlap by 4 nucleotides Rv3664c and Rv3665c are separated by 55 nucleotides Rv3665c and Rv3666c are separated by 1 nucleotides
Rv3663c: Rv3663c - Probable dipeptide-transport ATP-binding protein ABC transporter DppD, at 4,102,032 to 4,103,678
Rv3663c
Rv3664c: Rv3664c - Probable dipeptide-transport integral membrane protein ABC transporter DppC, at 4,103,675 to 4,104,475
Rv3664c
Rv3665c: Rv3665c - Probable dipeptide-transport integral membrane protein ABC transporter DppB, at 4,104,531 to 4,105,457
Rv3665c
Rv3666c: Rv3666c - Probable periplasmic dipeptide-binding lipoprotein DppA, at 4,105,459 to 4,107,084
Rv3666c
Position (kb) 4104
4105
4106 Strain fitness (log2 ratio) -2
-1
0
1 at 4104.213 kb on + strand, within Rv3664c at 4104.303 kb on + strand, within Rv3664c at 4104.397 kb on - strand at 4104.482 kb on - strand at 4104.482 kb on - strand at 4105.447 kb on + strand at 4105.998 kb on - strand, within Rv3666c at 4106.337 kb on - strand, within Rv3666c at 4106.362 kb on - strand, within Rv3666c
Per-strain Table
Position Strand Gene LocusTag Fraction Stearic 100 uM (C) remove 4,104,213 + Rv3664c 0.67 +0.7 4,104,303 + Rv3664c 0.78 +0.1 4,104,397 - -0.2 4,104,482 - -0.0 4,104,482 - -0.7 4,105,447 + -2.3 4,105,998 - Rv3666c 0.33 -0.7 4,106,337 - Rv3666c 0.54 -0.5 4,106,362 - Rv3666c 0.56 -0.2
Or see this region's nucleotide sequence