Experiment: heptadecanoic 250 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0117 and Rv0118c overlap by 17 nucleotides Rv0118c and Rv0119 are separated by 172 nucleotides
Rv0117: Rv0117 - Oxidative stress response regulatory protein OxyS, at 141,200 to 142,144
Rv0117
Rv0118c: Rv0118c - Probable oxalyl-CoA decarboxylase OxcA, at 142,128 to 143,876
Rv0118c
Rv0119: Rv0119 - Probable fatty-acid-CoA ligase FadD7 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 144,049 to 145,626
Rv0119
Position (kb) 142
143
144 Strain fitness (log2 ratio) -1
0
1
2
3 at 141.160 kb on + strand at 141.222 kb on - strand at 141.275 kb on + strand at 141.370 kb on + strand, within Rv0117 at 141.397 kb on - strand, within Rv0117 at 141.411 kb on + strand, within Rv0117 at 141.684 kb on - strand, within Rv0117 at 141.696 kb on - strand, within Rv0117 at 141.769 kb on - strand, within Rv0117 at 141.936 kb on + strand, within Rv0117 at 142.027 kb on + strand, within Rv0117 at 142.071 kb on + strand at 142.072 kb on - strand at 143.010 kb on + strand, within Rv0118c at 143.367 kb on - strand, within Rv0118c at 143.376 kb on + strand, within Rv0118c at 143.377 kb on - strand, within Rv0118c at 143.458 kb on + strand, within Rv0118c at 143.925 kb on + strand at 143.925 kb on + strand at 143.926 kb on - strand at 143.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction heptadecanoic 250 uM (C) remove 141,160 + -0.3 141,222 - +0.0 141,275 + -0.2 141,370 + Rv0117 0.18 -0.1 141,397 - Rv0117 0.21 -1.4 141,411 + Rv0117 0.22 +0.3 141,684 - Rv0117 0.51 -0.4 141,696 - Rv0117 0.52 +0.2 141,769 - Rv0117 0.60 +3.1 141,936 + Rv0117 0.78 -0.0 142,027 + Rv0117 0.88 -0.4 142,071 + -0.2 142,072 - -0.1 143,010 + Rv0118c 0.50 +0.8 143,367 - Rv0118c 0.71 +0.3 143,376 + Rv0118c 0.71 +0.6 143,377 - Rv0118c 0.71 +0.1 143,458 + Rv0118c 0.76 -0.1 143,925 + -0.8 143,925 + -0.5 143,926 - -0.5 143,968 - -0.3
Or see this region's nucleotide sequence