Experiment: heptadecanoic 250 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2992c and Rv2993c overlap by 4 nucleotides Rv2993c and Rv2994 are separated by 275 nucleotides Rv2994 and Rv2995c overlap by 149 nucleotides Rv2995c and Rv2996c are separated by 14 nucleotides
Rv2992c: Rv2992c - Glutamyl-tRNA synthetase GltS (glutamate--tRNA ligase) (glutamyl-tRNA synthase) (GLURS), at 3,348,805 to 3,350,277
Rv2992c
Rv2993c: Rv2993c - Possible 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (HHDD isomerase), at 3,350,274 to 3,350,993
Rv2993c
Rv2994: Rv2994 - Probable conserved integral membrane protein, at 3,351,269 to 3,352,606
Rv2994
Rv2995c: Rv2995c - Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH), at 3,352,458 to 3,353,468
Rv2995c
Rv2996c: Rv2996c - Probable D-3-phosphoglycerate dehydrogenase SerA1 (PGDH), at 3,353,483 to 3,355,069
Rv2996c
Position (kb)
3351
3352
3353 Strain fitness (log2 ratio)
-1
0
1 at 3350.416 kb on - strand, within Rv2993c at 3350.664 kb on - strand, within Rv2993c at 3350.664 kb on - strand, within Rv2993c at 3351.409 kb on - strand, within Rv2994 at 3351.545 kb on + strand, within Rv2994 at 3351.916 kb on - strand, within Rv2994 at 3352.032 kb on + strand, within Rv2994 at 3352.181 kb on + strand, within Rv2994 at 3352.182 kb on - strand, within Rv2994 at 3352.271 kb on + strand, within Rv2994 at 3352.306 kb on + strand, within Rv2994 at 3352.307 kb on - strand, within Rv2994
Per-strain Table
Position Strand Gene LocusTag Fraction heptadecanoic 250 uM (C) remove 3,350,416 - Rv2993c 0.20 +0.1 3,350,664 - Rv2993c 0.54 +0.0 3,350,664 - Rv2993c 0.54 -0.4 3,351,409 - Rv2994 0.10 -0.1 3,351,545 + Rv2994 0.21 +1.3 3,351,916 - Rv2994 0.48 +0.8 3,352,032 + Rv2994 0.57 +0.0 3,352,181 + Rv2994 0.68 +0.1 3,352,182 - Rv2994 0.68 -0.4 3,352,271 + Rv2994 0.75 +0.1 3,352,306 + Rv2994 0.78 +0.0 3,352,307 - Rv2994 0.78 -0.2
Or see this region's nucleotide sequence