Experiment: heptadecanoic 250 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0418 and Rv0419 are separated by 87 nucleotides Rv0419 and Rv0420c overlap by 22 nucleotides Rv0420c and Rv0421c are separated by 160 nucleotides
Rv0418: Rv0418 - Probable lipoprotein aminopeptidase LpqL, at 503,496 to 504,998
Rv0418
Rv0419: Rv0419 - Possible lipoprotein peptidase LpqM, at 505,086 to 506,582
Rv0419
Rv0420c: Rv0420c - Possible transmembrane protein, at 506,561 to 506,971
Rv0420c
Rv0421c: Rv0421c - Conserved hypothetical protein, at 507,132 to 507,761
Rv0421c
Position (kb) 505
506
507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 504.128 kb on + strand, within Rv0418 at 504.132 kb on - strand, within Rv0418 at 504.565 kb on - strand, within Rv0418 at 504.834 kb on + strand, within Rv0418 at 504.835 kb on - strand, within Rv0418 at 504.866 kb on - strand at 504.906 kb on + strand at 504.906 kb on + strand at 504.921 kb on + strand at 505.389 kb on + strand, within Rv0419 at 505.404 kb on + strand, within Rv0419 at 505.475 kb on + strand, within Rv0419 at 505.476 kb on - strand, within Rv0419 at 505.503 kb on + strand, within Rv0419 at 505.503 kb on + strand, within Rv0419 at 505.504 kb on - strand, within Rv0419 at 505.588 kb on - strand, within Rv0419 at 505.664 kb on + strand, within Rv0419 at 505.722 kb on + strand, within Rv0419 at 505.745 kb on + strand, within Rv0419 at 505.745 kb on + strand, within Rv0419 at 505.760 kb on + strand, within Rv0419 at 505.761 kb on - strand, within Rv0419 at 506.149 kb on - strand, within Rv0419 at 506.562 kb on + strand at 506.563 kb on - strand at 506.563 kb on - strand at 506.581 kb on - strand at 506.687 kb on + strand, within Rv0420c at 506.742 kb on + strand, within Rv0420c at 506.743 kb on - strand, within Rv0420c at 506.800 kb on - strand, within Rv0420c at 506.808 kb on + strand, within Rv0420c at 507.051 kb on + strand at 507.051 kb on + strand at 507.067 kb on - strand at 507.098 kb on + strand at 507.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction heptadecanoic 250 uM (C) remove 504,128 + Rv0418 0.42 -0.2 504,132 - Rv0418 0.42 -0.0 504,565 - Rv0418 0.71 -0.0 504,834 + Rv0418 0.89 -0.2 504,835 - Rv0418 0.89 -0.6 504,866 - -0.1 504,906 + +0.3 504,906 + -0.4 504,921 + -0.3 505,389 + Rv0419 0.20 -0.2 505,404 + Rv0419 0.21 -0.7 505,475 + Rv0419 0.26 -0.6 505,476 - Rv0419 0.26 +0.0 505,503 + Rv0419 0.28 -0.1 505,503 + Rv0419 0.28 -0.0 505,504 - Rv0419 0.28 -2.4 505,588 - Rv0419 0.34 -0.2 505,664 + Rv0419 0.39 -0.8 505,722 + Rv0419 0.42 -1.1 505,745 + Rv0419 0.44 -0.7 505,745 + Rv0419 0.44 -1.4 505,760 + Rv0419 0.45 -0.8 505,761 - Rv0419 0.45 +0.1 506,149 - Rv0419 0.71 -0.6 506,562 + -0.6 506,563 - -0.6 506,563 - +0.0 506,581 - -0.3 506,687 + Rv0420c 0.31 -0.8 506,742 + Rv0420c 0.44 -0.5 506,743 - Rv0420c 0.44 -0.5 506,800 - Rv0420c 0.58 +0.2 506,808 + Rv0420c 0.60 -0.9 507,051 + -0.2 507,051 + -0.1 507,067 - -0.5 507,098 + +0.2 507,139 - +1.8
Or see this region's nucleotide sequence