Experiment: heptadecanoic 250 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0169 and Rv0170 overlap by 4 nucleotides Rv0170 and Rv0171 overlap by 4 nucleotides
Rv0169: Rv0169 - Mce-family protein Mce1A, at 198,534 to 199,898
Rv0169
Rv0170: Rv0170 - Mce-family protein Mce1B, at 199,895 to 200,935
Rv0170
Rv0171: Rv0171 - Mce-family protein Mce1C, at 200,932 to 202,479
Rv0171
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.351 kb on - strand, within Rv0169 at 199.404 kb on + strand, within Rv0169 at 199.404 kb on + strand, within Rv0169 at 199.404 kb on + strand, within Rv0169 at 199.405 kb on - strand, within Rv0169 at 199.405 kb on - strand, within Rv0169 at 199.441 kb on - strand, within Rv0169 at 199.460 kb on + strand, within Rv0169 at 199.529 kb on + strand, within Rv0169 at 199.530 kb on - strand, within Rv0169 at 199.530 kb on - strand, within Rv0169 at 199.679 kb on + strand, within Rv0169 at 199.680 kb on - strand, within Rv0169 at 199.680 kb on - strand, within Rv0169 at 199.684 kb on - strand, within Rv0169 at 199.816 kb on - strand at 199.843 kb on - strand at 199.881 kb on - strand at 200.002 kb on + strand, within Rv0170 at 200.097 kb on + strand, within Rv0170 at 200.097 kb on + strand, within Rv0170 at 200.162 kb on + strand, within Rv0170 at 200.162 kb on + strand, within Rv0170 at 200.421 kb on + strand, within Rv0170 at 200.563 kb on + strand, within Rv0170 at 200.702 kb on + strand, within Rv0170 at 200.832 kb on - strand at 201.104 kb on + strand, within Rv0171 at 201.437 kb on - strand, within Rv0171 at 201.437 kb on - strand, within Rv0171 at 201.472 kb on - strand, within Rv0171 at 201.518 kb on + strand, within Rv0171 at 201.521 kb on + strand, within Rv0171 at 201.522 kb on - strand, within Rv0171 at 201.581 kb on + strand, within Rv0171 at 201.594 kb on + strand, within Rv0171 at 201.595 kb on - strand, within Rv0171 at 201.595 kb on - strand, within Rv0171 at 201.839 kb on - strand, within Rv0171 at 201.919 kb on - strand, within Rv0171
Per-strain Table
Position Strand Gene LocusTag Fraction heptadecanoic 250 uM (C) remove 199,351 - Rv0169 0.60 -1.2 199,404 + Rv0169 0.64 -2.4 199,404 + Rv0169 0.64 +0.0 199,404 + Rv0169 0.64 -1.0 199,405 - Rv0169 0.64 -1.6 199,405 - Rv0169 0.64 -1.9 199,441 - Rv0169 0.66 -1.2 199,460 + Rv0169 0.68 +0.2 199,529 + Rv0169 0.73 -0.3 199,530 - Rv0169 0.73 -0.8 199,530 - Rv0169 0.73 -1.0 199,679 + Rv0169 0.84 -1.8 199,680 - Rv0169 0.84 -0.6 199,680 - Rv0169 0.84 -1.3 199,684 - Rv0169 0.84 -1.1 199,816 - -2.2 199,843 - -1.0 199,881 - +0.0 200,002 + Rv0170 0.10 -2.6 200,097 + Rv0170 0.19 -1.3 200,097 + Rv0170 0.19 +1.8 200,162 + Rv0170 0.26 -1.3 200,162 + Rv0170 0.26 -2.5 200,421 + Rv0170 0.51 -0.8 200,563 + Rv0170 0.64 +0.5 200,702 + Rv0170 0.78 +1.8 200,832 - -1.1 201,104 + Rv0171 0.11 -0.8 201,437 - Rv0171 0.33 -2.1 201,437 - Rv0171 0.33 -1.3 201,472 - Rv0171 0.35 -0.7 201,518 + Rv0171 0.38 -0.5 201,521 + Rv0171 0.38 +0.2 201,522 - Rv0171 0.38 -1.3 201,581 + Rv0171 0.42 -1.2 201,594 + Rv0171 0.43 -2.6 201,595 - Rv0171 0.43 -1.7 201,595 - Rv0171 0.43 -2.1 201,839 - Rv0171 0.59 -1.9 201,919 - Rv0171 0.64 -1.0
Or see this region's nucleotide sequence