Experiment: butyrate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0648 and Rv0649 overlap by 4 nucleotides Rv0649 and Rv0650 overlap by 1 nucleotides Rv0650 and Rv0651 are separated by 330 nucleotides Rv0651 and Rv0652 are separated by 36 nucleotides
Rv0648: Rv0648 - Alpha-mannosidase, at 742,719 to 746,366
Rv0648
Rv0649: Rv0649 - Possible malonyl CoA-acyl carrier protein transacylase FabD2 (MCT), at 746,363 to 747,037
Rv0649
Rv0650: Rv0650 - Possible sugar kinase, at 747,037 to 747,945
Rv0650
Rv0651: Rv0651 - 50S ribosomal protein L10 RplJ, at 748,276 to 748,812
Rv0651
Rv0652: Rv0652 - 50S ribosomal protein L7/L12 RplL (SA1), at 748,849 to 749,241
Rv0652
Position (kb) 747
748 Strain fitness (log2 ratio) -1
0
1
2 at 746.058 kb on + strand at 746.058 kb on + strand at 746.058 kb on + strand at 746.059 kb on - strand at 746.225 kb on - strand at 746.334 kb on + strand at 746.789 kb on + strand, within Rv0649 at 746.789 kb on + strand, within Rv0649 at 746.790 kb on - strand, within Rv0649 at 746.790 kb on - strand, within Rv0649 at 746.790 kb on - strand, within Rv0649 at 746.988 kb on - strand at 747.246 kb on + strand, within Rv0650 at 747.254 kb on + strand, within Rv0650 at 747.824 kb on + strand, within Rv0650 at 747.824 kb on + strand, within Rv0650 at 747.943 kb on + strand at 748.010 kb on - strand at 748.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate 10 mM (C) remove 746,058 + -0.5 746,058 + -0.7 746,058 + -0.0 746,059 - +0.3 746,225 - -0.9 746,334 + +0.4 746,789 + Rv0649 0.63 -1.4 746,789 + Rv0649 0.63 -0.3 746,790 - Rv0649 0.63 +0.4 746,790 - Rv0649 0.63 +0.3 746,790 - Rv0649 0.63 -0.1 746,988 - +0.0 747,246 + Rv0650 0.23 -0.7 747,254 + Rv0650 0.24 -0.7 747,824 + Rv0650 0.87 +1.9 747,824 + Rv0650 0.87 -0.2 747,943 + -0.7 748,010 - -0.1 748,047 + -0.3
Or see this region's nucleotide sequence