Experiment: butyrate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0397A and Rv0398c are separated by 36 nucleotides Rv0398c and Rv0399c are separated by 6 nucleotides Rv0399c and Rv0400c are separated by 9 nucleotides
Rv0397A: Rv0397A - Conserved protein, at 476,394 to 476,642
Rv0397A
Rv0398c: Rv0398c - Possible secreted protein, at 476,679 to 477,320
Rv0398c
Rv0399c: Rv0399c - Possible conserved lipoprotein LpqK, at 477,327 to 478,556
Rv0399c
Rv0400c: Rv0400c - Acyl-CoA dehydrogenase FadE7, at 478,566 to 479,753
Rv0400c
Position (kb) 477
478
479 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 476.345 kb on + strand at 476.426 kb on - strand, within Rv0397A at 476.545 kb on + strand, within Rv0397A at 476.546 kb on - strand, within Rv0397A at 476.547 kb on + strand, within Rv0397A at 476.547 kb on + strand, within Rv0397A at 476.681 kb on - strand at 476.767 kb on + strand, within Rv0398c at 476.768 kb on - strand, within Rv0398c at 477.134 kb on + strand, within Rv0398c at 477.324 kb on + strand at 477.328 kb on + strand at 477.329 kb on - strand at 477.391 kb on - strand at 477.393 kb on + strand at 477.393 kb on + strand at 477.488 kb on - strand, within Rv0399c at 477.547 kb on - strand, within Rv0399c at 477.566 kb on - strand, within Rv0399c at 477.656 kb on - strand, within Rv0399c at 478.152 kb on + strand, within Rv0399c at 478.267 kb on + strand, within Rv0399c at 479.497 kb on + strand, within Rv0400c at 479.498 kb on - strand, within Rv0400c at 479.498 kb on - strand, within Rv0400c at 479.498 kb on - strand, within Rv0400c
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate 10 mM (C) remove 476,345 + +0.5 476,426 - Rv0397A 0.13 +0.0 476,545 + Rv0397A 0.61 +0.2 476,546 - Rv0397A 0.61 -0.5 476,547 + Rv0397A 0.61 -0.4 476,547 + Rv0397A 0.61 +0.1 476,681 - -0.1 476,767 + Rv0398c 0.14 +0.1 476,768 - Rv0398c 0.14 -0.5 477,134 + Rv0398c 0.71 -0.7 477,324 + +0.0 477,328 + -0.3 477,329 - -0.1 477,391 - +0.2 477,393 + -0.1 477,393 + +3.7 477,488 - Rv0399c 0.13 +0.7 477,547 - Rv0399c 0.18 -2.5 477,566 - Rv0399c 0.19 -0.8 477,656 - Rv0399c 0.27 -1.1 478,152 + Rv0399c 0.67 +0.6 478,267 + Rv0399c 0.76 -1.1 479,497 + Rv0400c 0.78 +0.1 479,498 - Rv0400c 0.78 +1.6 479,498 - Rv0400c 0.78 -0.6 479,498 - Rv0400c 0.78 -0.4
Or see this region's nucleotide sequence