Experiment: Valeric 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0164 and Rv0165c are separated by 32 nucleotides Rv0165c and Rv0166 are separated by 177 nucleotides Rv0166 and Rv0167 are separated by 203 nucleotides
Rv0164: Rv0164 - Conserved protein TB18.5, at 193,626 to 194,111
Rv0164
Rv0165c: Rv0165c - Probable transcriptional regulatory protein Mce1R (probably GntR-family), at 194,144 to 194,815
Rv0165c
Rv0166: Rv0166 - Probable fatty-acid-CoA ligase FadD5 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 194,993 to 196,657
Rv0166
Rv0167: Rv0167 - Conserved integral membrane protein YrbE1A, at 196,861 to 197,658
Rv0167
Position (kb) 194
195
196
197 Strain fitness (log2 ratio) -1
0
1
2 at 194.308 kb on - strand, within Rv0165c at 194.310 kb on + strand, within Rv0165c at 194.310 kb on + strand, within Rv0165c at 194.311 kb on - strand, within Rv0165c at 194.311 kb on - strand, within Rv0165c at 194.311 kb on - strand, within Rv0165c at 194.324 kb on - strand, within Rv0165c at 194.324 kb on - strand, within Rv0165c at 194.324 kb on - strand, within Rv0165c at 194.933 kb on + strand at 194.934 kb on - strand at 194.934 kb on - strand at 194.941 kb on - strand at 194.990 kb on + strand at 194.991 kb on - strand at 194.991 kb on - strand at 195.053 kb on + strand at 195.162 kb on + strand, within Rv0166 at 195.162 kb on + strand, within Rv0166 at 195.162 kb on + strand, within Rv0166 at 195.245 kb on - strand, within Rv0166 at 195.303 kb on + strand, within Rv0166 at 195.483 kb on - strand, within Rv0166 at 195.483 kb on - strand, within Rv0166 at 195.492 kb on + strand, within Rv0166 at 195.493 kb on - strand, within Rv0166 at 195.560 kb on + strand, within Rv0166 at 195.561 kb on - strand, within Rv0166 at 195.641 kb on + strand, within Rv0166 at 195.642 kb on - strand, within Rv0166 at 195.758 kb on + strand, within Rv0166 at 195.859 kb on + strand, within Rv0166 at 195.860 kb on - strand, within Rv0166 at 195.895 kb on - strand, within Rv0166 at 196.294 kb on + strand, within Rv0166 at 196.295 kb on - strand, within Rv0166 at 196.316 kb on + strand, within Rv0166 at 196.316 kb on + strand, within Rv0166 at 196.317 kb on - strand, within Rv0166 at 196.458 kb on + strand, within Rv0166 at 196.458 kb on + strand, within Rv0166 at 196.490 kb on + strand, within Rv0166 at 196.656 kb on - strand at 196.684 kb on - strand at 196.700 kb on + strand at 196.701 kb on - strand at 196.757 kb on - strand at 197.091 kb on + strand, within Rv0167
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 10 mM (C) remove 194,308 - Rv0165c 0.24 -0.2 194,310 + Rv0165c 0.25 +0.1 194,310 + Rv0165c 0.25 -0.4 194,311 - Rv0165c 0.25 -0.1 194,311 - Rv0165c 0.25 +0.4 194,311 - Rv0165c 0.25 +0.3 194,324 - Rv0165c 0.27 -0.5 194,324 - Rv0165c 0.27 +2.4 194,324 - Rv0165c 0.27 -0.4 194,933 + +0.2 194,934 - -0.6 194,934 - -0.4 194,941 - +0.1 194,990 + -0.6 194,991 - -0.1 194,991 - -0.2 195,053 + -0.3 195,162 + Rv0166 0.10 -0.4 195,162 + Rv0166 0.10 +0.3 195,162 + Rv0166 0.10 +0.1 195,245 - Rv0166 0.15 -0.8 195,303 + Rv0166 0.19 -1.1 195,483 - Rv0166 0.29 -0.6 195,483 - Rv0166 0.29 -0.0 195,492 + Rv0166 0.30 -0.5 195,493 - Rv0166 0.30 +0.4 195,560 + Rv0166 0.34 -0.5 195,561 - Rv0166 0.34 -0.6 195,641 + Rv0166 0.39 -0.4 195,642 - Rv0166 0.39 -0.9 195,758 + Rv0166 0.46 -0.1 195,859 + Rv0166 0.52 -0.1 195,860 - Rv0166 0.52 -0.3 195,895 - Rv0166 0.54 -0.5 196,294 + Rv0166 0.78 -0.5 196,295 - Rv0166 0.78 -0.4 196,316 + Rv0166 0.79 -0.9 196,316 + Rv0166 0.79 +0.4 196,317 - Rv0166 0.80 -0.6 196,458 + Rv0166 0.88 -0.4 196,458 + Rv0166 0.88 -0.4 196,490 + Rv0166 0.90 +0.8 196,656 - +0.2 196,684 - +0.0 196,700 + +1.0 196,701 - +1.4 196,757 - -1.0 197,091 + Rv0167 0.29 +0.8
Or see this region's nucleotide sequence