Experiment: Valeric 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0154c and Rv0155 are separated by 423 nucleotides Rv0155 and Rv0156 are separated by 0 nucleotides Rv0156 and Rv0157 overlap by 4 nucleotides
Rv0154c: Rv0154c - Probable acyl-CoA dehydrogenase FadE2, at 181,987 to 183,198
Rv0154c
Rv0155: Rv0155 - Probable NAD(P) transhydrogenase (subunit alpha) PntAa [first part; catalytic part] (pyridine nucleotide transhydrogenase subunit alpha) (nicotinamide nucleotide transhydrogenase subunit alpha), at 183,622 to 184,722
Rv0155
Rv0156: Rv0156 - Probable NAD(P) transhydrogenase (subunit alpha) PntAb [second part; integral membrane protein] (pyridine nucleotide transhydrogenase subunit alpha) (nicotinamide nucleotide transhydrogenase subunit alpha), at 184,723 to 185,055
Rv0156
Rv0157: Rv0157 - Probable NAD(P) transhydrogenase (subunit beta) PntB [integral membrane protein] (pyridine nucleotide transhydrogenase subunit beta) (nicotinamide nucleotide transhydrogenase subunit beta), at 185,052 to 186,479
Rv0157
Position (kb) 183
184
185 Strain fitness (log2 ratio) -1
0
1 at 182.718 kb on + strand, within Rv0154c at 182.736 kb on - strand, within Rv0154c at 182.736 kb on - strand, within Rv0154c at 182.736 kb on - strand, within Rv0154c at 183.019 kb on + strand, within Rv0154c at 183.020 kb on - strand, within Rv0154c at 183.020 kb on - strand, within Rv0154c at 183.020 kb on - strand, within Rv0154c at 183.110 kb on + strand at 183.221 kb on + strand at 183.221 kb on + strand at 183.222 kb on - strand at 183.225 kb on + strand at 183.225 kb on + strand at 183.245 kb on + strand at 183.245 kb on + strand at 183.246 kb on - strand at 183.246 kb on - strand at 183.246 kb on - strand at 183.246 kb on - strand at 183.246 kb on - strand at 183.345 kb on + strand at 183.345 kb on + strand at 183.346 kb on - strand at 183.406 kb on - strand at 183.508 kb on + strand at 183.509 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.599 kb on + strand at 183.600 kb on - strand at 183.615 kb on - strand at 183.925 kb on - strand, within Rv0155 at 184.051 kb on + strand, within Rv0155 at 184.051 kb on + strand, within Rv0155 at 184.054 kb on - strand, within Rv0155 at 184.054 kb on - strand, within Rv0155 at 184.216 kb on + strand, within Rv0155 at 184.217 kb on - strand, within Rv0155 at 184.217 kb on - strand, within Rv0155 at 184.607 kb on - strand, within Rv0155 at 184.607 kb on - strand, within Rv0155 at 184.720 kb on + strand at 184.721 kb on - strand at 184.721 kb on - strand at 184.726 kb on + strand at 185.082 kb on + strand at 185.083 kb on - strand at 185.109 kb on + strand at 185.110 kb on - strand at 185.487 kb on - strand, within Rv0157 at 185.487 kb on - strand, within Rv0157 at 185.487 kb on - strand, within Rv0157 at 185.487 kb on - strand, within Rv0157
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 10 mM (C) remove 182,718 + Rv0154c 0.60 -0.0 182,736 - Rv0154c 0.62 -0.6 182,736 - Rv0154c 0.62 +1.5 182,736 - Rv0154c 0.62 -0.5 183,019 + Rv0154c 0.85 -0.4 183,020 - Rv0154c 0.85 -0.6 183,020 - Rv0154c 0.85 -1.3 183,020 - Rv0154c 0.85 -1.3 183,110 + -0.6 183,221 + -0.6 183,221 + -0.3 183,222 - +0.6 183,225 + -0.6 183,225 + +0.0 183,245 + -0.6 183,245 + +0.2 183,246 - +0.1 183,246 - -0.0 183,246 - -0.3 183,246 - +0.4 183,246 - -0.8 183,345 + -0.5 183,345 + +0.4 183,346 - -1.2 183,406 - +0.1 183,508 + -0.0 183,509 - +0.7 183,549 - -0.3 183,549 - +0.6 183,599 + -0.6 183,600 - +0.8 183,615 - +1.2 183,925 - Rv0155 0.28 +0.5 184,051 + Rv0155 0.39 -0.0 184,051 + Rv0155 0.39 +0.1 184,054 - Rv0155 0.39 +1.6 184,054 - Rv0155 0.39 -0.7 184,216 + Rv0155 0.54 +0.2 184,217 - Rv0155 0.54 -0.1 184,217 - Rv0155 0.54 +0.3 184,607 - Rv0155 0.89 +0.7 184,607 - Rv0155 0.89 +1.1 184,720 + -0.7 184,721 - -0.3 184,721 - -0.7 184,726 + +0.2 185,082 + -0.1 185,083 - +0.2 185,109 + -0.8 185,110 - +1.2 185,487 - Rv0157 0.30 -0.4 185,487 - Rv0157 0.30 -0.6 185,487 - Rv0157 0.30 -0.5 185,487 - Rv0157 0.30 +0.4
Or see this region's nucleotide sequence