Experiment: Valeric 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0129c and Rv0130 are separated by 246 nucleotides Rv0130 and Rv0131c are separated by 12 nucleotides
Rv0129c: Rv0129c - Secreted antigen 85-C FbpC (85C) (antigen 85 complex C) (AG58C) (mycolyl transferase 85C) (fibronectin-binding protein C), at 156,578 to 157,600
Rv0129c
Rv0130: Rv0130 - Probable 3-hydroxyl-thioester dehydratase, at 157,847 to 158,302
Rv0130
Rv0131c: Rv0131c - Probable acyl-CoA dehydrogenase FadE1, at 158,315 to 159,658
Rv0131c
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1 at 156.949 kb on - strand, within Rv0129c at 157.035 kb on + strand, within Rv0129c at 157.222 kb on - strand, within Rv0129c at 157.234 kb on - strand, within Rv0129c at 157.288 kb on - strand, within Rv0129c at 157.327 kb on - strand, within Rv0129c at 157.435 kb on - strand, within Rv0129c at 157.435 kb on - strand, within Rv0129c at 157.525 kb on + strand at 157.600 kb on + strand at 157.601 kb on - strand at 157.604 kb on + strand at 157.607 kb on + strand at 157.818 kb on - strand at 157.823 kb on + strand at 157.824 kb on - strand at 158.079 kb on - strand, within Rv0130 at 158.638 kb on - strand, within Rv0131c at 158.761 kb on + strand, within Rv0131c at 158.840 kb on + strand, within Rv0131c at 159.045 kb on + strand, within Rv0131c at 159.046 kb on - strand, within Rv0131c
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 10 mM (C) remove 156,949 - Rv0129c 0.36 -2.4 157,035 + Rv0129c 0.45 -1.8 157,222 - Rv0129c 0.63 -0.3 157,234 - Rv0129c 0.64 -0.8 157,288 - Rv0129c 0.69 -1.6 157,327 - Rv0129c 0.73 -0.6 157,435 - Rv0129c 0.84 -0.8 157,435 - Rv0129c 0.84 +0.4 157,525 + -1.0 157,600 + -0.6 157,601 - -1.4 157,604 + -1.4 157,607 + +1.0 157,818 - -2.2 157,823 + -0.1 157,824 - -0.4 158,079 - Rv0130 0.51 +0.3 158,638 - Rv0131c 0.24 -0.7 158,761 + Rv0131c 0.33 +0.3 158,840 + Rv0131c 0.39 -1.1 159,045 + Rv0131c 0.54 +1.0 159,046 - Rv0131c 0.54 -0.4
Or see this region's nucleotide sequence